PDB entry 1nam

View 1nam on RCSB PDB site
Description: murine alloreactive scfv tcr-peptide-MHC class I molecule complex
Class: immune system
Keywords: T cell receptor, class I MHC, H-2Kb, TCR-pMHC complex, alloreactivity, crossreactivity
Deposited on 2002-11-28, released 2003-03-11
The last revision prior to the SCOP 1.73 freeze date was dated 2003-03-11, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.237
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: BM3.3 T Cell Receptor alpha-Chain
    Species: MUS MUSCULUS
    Domains in SCOP 1.73: d1nama_
  • Chain 'B':
    Compound: BM3.3 T Cell Receptor beta-Chain
    Species: MUS MUSCULUS
    Domains in SCOP 1.73: d1namb_
  • Chain 'H':
    Compound: h-2 class I histocompatibility antigen, k-b alpha chain precursor
    Species: MUS MUSCULUS
    Gene: H2-K
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1namh1, d1namh2
  • Chain 'L':
    Compound: Beta-2-microglobulin
    Species: MUS MUSCULUS
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (1-99)
      • cloning artifact (0)
    Domains in SCOP 1.73: d1naml_
  • Chain 'P':
    Compound: Nucleocapsid
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1namA (A:)
qkvtqtqtsisvmekttvtmdcvyetqdssyflfwykqtasgeivflirqdsykkenatv
ghyslnfqkpkssigliitatqiedsavyfcamrgdyggsgnklifgtgtllsvkp

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1namB (B:)
vtlleqnprwrlvprgqavnlrcilknsqypwmswyqqdlqkqlqwlftlrspgdkevks
lpgadylatrvtdtelrlqvanmsqgrtlyctcsadrvgntlyfgegsrlivv

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1namH (H:)
gphslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrwe

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1namL (L:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'P':
    No sequence available.