PDB entry 1n48

View 1n48 on RCSB PDB site
Description: Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion
Class: transferase/DNA
Keywords: Y-family, DNA polymerase, DNA lesion bypass, protein-DNA complex
Deposited on 2002-10-30, released 2004-02-24
The last revision prior to the SCOP 1.75 freeze date was dated 2004-02-24, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.204
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus
    Gene: DPO4
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1n48a1, d1n48a2
  • Chain 'B':
    Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*cp*tp*a)-3'
  • Chain 'C':
    Compound: 5'-d(*cp*ap*(3dr)p*tp*ap*gp*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3'
  • Heterogens: CA, ATP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1n48A (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt

    Sequence, based on observed residues (ATOM records): (download) 
    >1n48A (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfie

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.