PDB entry 1mi5

View 1mi5 on RCSB PDB site
Description: The crystal structure of LC13 TcR in complex with HLAB8-EBV peptide complex
Class: immune system
Keywords: T cell receptor, Major histocompatability complex (class I), HLA B8, Epstein Barr Virus, Immunodominant TcR (LC13), IMMUNE SYSTEM
Deposited on 2002-08-21, released 2003-02-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.226
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1mi5a1, d1mi5a2
  • Chain 'B':
    Compound: beta 2 microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1mi5b_
  • Chain 'C':
    Compound: Epstein Barr Virus peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • GB AAB20984 (0-8)
  • Chain 'D':
    Compound: TcR alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1mi5d1, d1mi5d2
  • Chain 'E':
    Compound: TCR beta chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1mi5e1, d1mi5e2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1mi5A (A:)
    gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaaspreeprapwieqegpeyw
    drntqifktntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydg
    kdyialnedlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtle
    radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrweps
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1mi5B (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1mi5D (D:)
    kttqpnsmesneeepvhlpcnhstisgtdyihwyrqlpsqgpeyvihgltsnvnnrmasl
    aiaedrksstlilhratlrdaavyycilplaggtsygkltfgqgtiltvhpniqnpdpav
    yqlrdskssdksvclftdfdsqtnvsqskdsdvyitdktvldmrsmdfksnsavawsnks
    dfacanafnnsiipedtffps
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1mi5E (E:)
    gvsqsprykvakrgqdvalrcdpisghvslfwyqqalgqgpefltyfqneaqldksglps
    drffaerpegsvstlkiqrtqqedsavylcasslgqayeqyfgpgtrltvtedlknvfpp
    evavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplkeqpal
    ndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgra
    d