PDB entry 1m9d
View 1m9d on RCSB PDB site
Description: X-ray crystal structure of Cyclophilin A/HIV-1 CA N-terminal domain (1-146) O-type chimera Complex.
Class: Isomerase/Viral protein
Keywords: CAPSID, HIV-1, CYCLOPHILIN A, ISOMERASE, ROTAMASE, Isomerase/Viral protein COMPLEX
Deposited on
2002-07-28, released
2003-05-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.17
AEROSPACI score: 0.48
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: cyclophilin a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1m9da_ - Chain 'B':
Compound: cyclophilin a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1m9db_ - Chain 'C':
Compound: hiv-1 capsid
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: CA
Database cross-references and differences (RAF-indexed):
- Uniprot Q72497 (0-145)
- engineered (82)
- engineered (85-87)
- engineered (90-91)
- engineered (95)
- see remark 999 (119)
Domains in SCOPe 2.08: d1m9dc_ - Chain 'D':
Compound: hiv-1 capsid
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: CA
Database cross-references and differences (RAF-indexed):
- Uniprot Q72497 (0-145)
- engineered (82)
- engineered (85-87)
- engineered (90-91)
- engineered (95)
- see remark 999 (119)
Domains in SCOPe 2.08: d1m9dd_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1m9dA (A:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1m9dB (B:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle
Sequence, based on observed residues (ATOM records): (download)
>1m9dB (B:)
nptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgfmc
qggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictaktewl
dgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1m9dC (C:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrthppamgplppgqireprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmys
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1m9dD (D:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrthppamgplppgqireprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmys