PDB entry 1m5o

View 1m5o on RCSB PDB site
Description: Transition State Stabilization by a Catalytic RNA
Class: translation/RNA
Keywords: HAIRPIN RIBOZYME, CATALYTIC RNA, U1A RNA BINDING PROTEIN, Vandate, transition state mimic, TRANSLATION/RNA COMPLEX
Deposited on 2002-07-09, released 2002-10-12
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.229
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA substrate
    Species: synthetic, synthetic
  • Chain 'B':
    Compound: RNA hairpin ribozyme
    Species: synthetic, synthetic
  • Chain 'C':
    Compound: U1 small nuclear ribonucleoprotein A
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P09012
      • engineered (30)
      • engineered (35)
    Domains in SCOPe 2.04: d1m5oc_
  • Chain 'D':
    Compound: RNA substrate
    Species: synthetic, synthetic
  • Chain 'E':
    Compound: RNA hairpin ribozyme
    Species: synthetic, synthetic
  • Chain 'F':
    Compound: U1 small nuclear ribonucleoprotein A
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P09012
      • engineered (30)
      • engineered (35)
    Domains in SCOPe 2.04: d1m5of_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1m5oC (C:)
mavpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifk
evssatnalrsmqgfpfydkpmriqyaktdsdiiakmkgt

    Sequence, based on observed residues (ATOM records): (download) 
    >1m5oC (C:)
trpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkevssa
tnalrsmqgfpfydkpmriqyaktdsdiiakm

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1m5oF (F:)
mavpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifk
evssatnalrsmqgfpfydkpmriqyaktdsdiiakmkgt

    Sequence, based on observed residues (ATOM records): (download) 
    >1m5oF (F:)
petrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkevs
satnalrsmqgfpfydkpmriqyaktdsdiiakmk