PDB entry 1m05

View 1m05 on RCSB PDB site
Description: HLA B8 in complex with an Epstein Barr Virus determinant
Class: immune system
Keywords: MHC class I, HLA B8, Epstein Barr virus, IMMUNE SYSTEM
Deposited on 2002-06-11, released 2003-09-02
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.242
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, B-8 B*0801 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1m05a1, d1m05a2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1m05b_
  • Chain 'C':
    Compound: HLA class I histocompatibility antigen, B-8 B*0801 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1m05c1, d1m05c2
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1m05d_
  • Chain 'E':
    Compound: EBNA-3 nuclear protein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12977 (0-8)
      • see remark 999 (8)
  • Chain 'F':
    Compound: EBNA-3 nuclear protein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12977 (0-8)
      • see remark 999 (8)
  • Heterogens: CD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1m05A (A:)
gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaaspreeprapwieqegpeyw
drntqifktntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydg
kdyialnedlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtle
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrweps

    Sequence, based on observed residues (ATOM records): (download) 
    >1m05A (A:)
gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaapwieqegpeywdrntqifk
tntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydgkdyialne
dlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtleradppkth
vthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrtfqkwaavv
vpsgeeqrytchvqheglpkpltlrweps

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1m05B (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1m05C (C:)
gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaaspreeprapwieqegpeyw
drntqifktntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydg
kdyialnedlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtle
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrweps

    Sequence, based on observed residues (ATOM records): (download) 
    >1m05C (C:)
gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaapwieqegpeywdrntqifk
tntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydgkdyialne
dlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtleradppkth
vthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrtfqkwaavv
vpsgeeqrytchvqheglpkpltlrweps

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1m05D (D:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.