PDB entry 1lnx
View 1lnx on RCSB PDB site
Description: Crystal structure of the P.aerophilum SmAP1 heptamer in a new crystal form (C2221)
Class: RNA BINDING PROTEIN, transcription
Keywords: beta barrel-like structure (OB fold); homoheptameric, RNA BINDING PROTEIN, transcription
Deposited on
2002-05-04, released
2003-03-25
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-11-16, with a file datestamp of
2011-11-11.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.182
AEROSPACI score: 0.45
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: small nuclear ribonucleoprotein homolog (Sm-like)
Species: Pyrobaculum aerophilum [TaxId:13773]
Gene: SmAP1, GPA2549
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1lnxa1, d1lnxa2 - Chain 'B':
Compound: small nuclear ribonucleoprotein homolog (Sm-like)
Species: Pyrobaculum aerophilum [TaxId:13773]
Gene: SmAP1, GPA2549
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1lnxb_ - Chain 'C':
Compound: small nuclear ribonucleoprotein homolog (Sm-like)
Species: Pyrobaculum aerophilum [TaxId:13773]
Gene: SmAP1, GPA2549
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1lnxc_ - Chain 'D':
Compound: small nuclear ribonucleoprotein homolog (Sm-like)
Species: Pyrobaculum aerophilum [TaxId:13773]
Gene: SmAP1, GPA2549
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1lnxd_ - Chain 'E':
Compound: small nuclear ribonucleoprotein homolog (Sm-like)
Species: Pyrobaculum aerophilum [TaxId:13773]
Gene: SmAP1, GPA2549
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1lnxe_ - Chain 'F':
Compound: small nuclear ribonucleoprotein homolog (Sm-like)
Species: Pyrobaculum aerophilum [TaxId:13773]
Gene: SmAP1, GPA2549
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1lnxf1, d1lnxf2 - Chain 'G':
Compound: small nuclear ribonucleoprotein homolog (Sm-like)
Species: Pyrobaculum aerophilum [TaxId:13773]
Gene: SmAP1, GPA2549
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1lnxg_ - Heterogens: URI, ACY, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1lnxA (A:)
masdiskcfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnv
ykrgtmvvrgenvlfispvpg
Sequence, based on observed residues (ATOM records): (download)
>1lnxA (A:)
cfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnvykrgtmv
vrgenvlfispvpg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1lnxB (B:)
masdiskcfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnv
ykrgtmvvrgenvlfispvpg
Sequence, based on observed residues (ATOM records): (download)
>1lnxB (B:)
cfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnvykrgtmv
vrgenvlfispvp
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1lnxC (C:)
masdiskcfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnv
ykrgtmvvrgenvlfispvpg
Sequence, based on observed residues (ATOM records): (download)
>1lnxC (C:)
cfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnvykrgtmv
vrgenvlfispvp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1lnxD (D:)
masdiskcfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnv
ykrgtmvvrgenvlfispvpg
Sequence, based on observed residues (ATOM records): (download)
>1lnxD (D:)
cfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnvykrgtmv
vrgenvlfispvp
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1lnxE (E:)
masdiskcfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnv
ykrgtmvvrgenvlfispvpg
Sequence, based on observed residues (ATOM records): (download)
>1lnxE (E:)
cfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnvykrgtmv
vrgenvlfispvp
- Chain 'F':
Sequence, based on SEQRES records: (download)
>1lnxF (F:)
masdiskcfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnv
ykrgtmvvrgenvlfispvpg
Sequence, based on observed residues (ATOM records): (download)
>1lnxF (F:)
cfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnvykrgtmv
vrgenvlfispvpg
- Chain 'G':
Sequence, based on SEQRES records: (download)
>1lnxG (G:)
masdiskcfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnv
ykrgtmvvrgenvlfispvpg
Sequence, based on observed residues (ATOM records): (download)
>1lnxG (G:)
cfatlgatlqdsigkqvlvklrdsheirgilrsfdqhvnllledaeeiidgnvykrgtmv
vrgenvlfispvp