PDB entry 1ldk

View 1ldk on RCSB PDB site
Description: Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex
Class: ligase
Keywords: SCF, cullin, rbx1, roc1, hrt1, skp1, skp2, F-box, fbox, ubiquitin, ubiquitination, E3 ligase
Deposited on 2002-04-08, released 2002-05-08
The last revision prior to the SCOP 1.73 freeze date was dated 2002-05-08, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.289
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cullin homolog
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ldka_
  • Chain 'B':
    Compound: cullin homolog
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ldkb1, d1ldkb2
  • Chain 'C':
    Compound: RING-box protein 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ldkc_
  • Chain 'D':
    Compound: cyclin a/cdk2-associated protein p19
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ldkd1, d1ldkd2
  • Chain 'E':
    Compound: SKP2-like protein type gamma
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ldke1
  • Heterogens: ZN

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ldkA (A:)
igldqiwddlragiqqvytrqsmaksrymelythvynyctsvhqsnqargagvppskskk
gqtpggaqfvglelykrlkeflknyltnllkdgedlmdesvlkfytqqwedyrfsskvln
gicaylnrhwvrrecdegrkgiyeiyslalvtwrdclfrplnkqvtnavlkliekernge
tintrlisgvvqsyvelglneddafakgptltvykesfesqfladterfytresteflqq
npvteymkkaearlleeqrrvqvylhestqdelarkceqvliekhleifhtefqnlldad
knedlgrmynlvsriqdglgelkkllethihnqglaaiekcgeaalndpkmyvqtvldvh
kkynalvmsafnndagfvaaldkacgrfinnnavtk

    Sequence, based on observed residues (ATOM records): (download) 
    >1ldkA (A:)
igldqiwddlragiqqvytrqsmaksrymelythvynyctsqfvglelykrlkeflknyl
tnllkdgedlmdesvlkfytqqwedyrfsskvlngicaylnrhwvrreckgiyeiyslal
vtwrdclfrplnkqvtnavlkliekerngetintrlisgvvqsyvelglnedltvykesf
esqfladterfytresteflqqnpvteymkkaearlleeqrrvqvylhestqdelarkce
qvliekhleifhtefqnlldadknedlgrmynlvsriqdglgelkkllethihnqglaai
ekcgeaalndpkmyvqtvldvhkkynalvmsafnndagfvaaldkacgrfinnnavtk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ldkB (B:)
maqssskspellarycdsllkkssknpeeaeledtlnqvmvvfkyiedkdvfqkfyakml
akrlvhqnsasddaeasmisklkqacgfeytsklqrmfqdigvskdlneqfkkhltnsep
ldldfsiqvlssgswpfqqsctfalpselersyqrftafyasrhsgrkltwlyqlskgel
vtncfknrytlqastfqmaillqyntedaytvqqltdstqikmdilaqvlqillkskllv
ledenanvdevelkpdtliklylgyknkklrvninvpmkteqkqeqetthknieedrkll
iqaaivrimkmrkvlkhqqllgevltqlssrfkprvpvikkcidiliekeylervdgekd
tysyla

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ldkC (C:)
kkrfevkkwnavalwawdivvdncaicrnhimdlciecqanqasatseectvawgvcnha
fhfhcisrwlktrqvcpldnrewefqkygh

    Sequence, based on observed residues (ATOM records): (download) 
    >1ldkC (C:)
kkrfevkkwnavalwawdivvdncaicrnhimdlciecqanqasatseectvawgvcnha
fhfhcisrwlktrqvcpldnrewefqky

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1ldkD (D:)
psiklqssdgeifevdveiakqsvtiktmledlgmdpvplpnvnaailkkviqwcthhkd
dppppeddenkekrtddipvwdqeflkvdqgtlfelilaanyldikglldvtcktvanmi
kgktpeeirktfn

    Sequence, based on observed residues (ATOM records): (download) 
    >1ldkD (D:)
psiklqssdgeifevdveiakqsvtiktmledlgmdpvplpnvnaailkkviqwcthhkd
ddipvwdqeflkvdqgtlfelilaanyldikglldvtcktvanmikgktpeeirktfn

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ldkE (E:)
wdslpdelllgifsclclpellkvsgvckrwyrlasdeslw