PDB entry 1l2g

View 1l2g on RCSB PDB site
Description: Structure of a C-terminally truncated form of glycoprotein D from HSV-1
Class: viral protein
Keywords: Ig fold, viral envelope glycoprotein, Viral protein
Deposited on 2002-02-21, released 2003-12-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycoprotein d
    Species: Human herpesvirus 1 [TaxId:10298]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1l2ga_
  • Chain 'B':
    Compound: glycoprotein d
    Species: Human herpesvirus 1 [TaxId:10298]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1l2gb_
  • Chain 'C':
    Compound: glycoprotein d
    Species: Human herpesvirus 1 [TaxId:10298]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1l2gc_
  • Chain 'D':
    Compound: glycoprotein d
    Species: Human herpesvirus 1 [TaxId:10298]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1l2gd_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1l2gA (A:)
dpkyaladaslkmadpnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvy
yavleracrsvllnapseapqivrgasedvrkqpynltiawfrmggncaipitvmeytec
synkslgacpirtqprwnyydsfsavsednlgflmhapafetagtylrlvkindwteitq
filehrakgsckyalplrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslki
agwhgpkapytstllppelsetpnatqpelapedpedsalledpvgt

    Sequence, based on observed residues (ATOM records): (download) 
    >1l2gA (A:)
pnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvyyavleracrsvllna
pseapqivrgasedvrkqpynltiawfrmggncaipitvmeytecsynkslgacpirtqp
rwnyydsfsavsednlgflmhapafetagtylrlvkindwteitqfilehrakgsckyal
plrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslkiagwhgpkapytstll
pp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1l2gB (B:)
dpkyaladaslkmadpnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvy
yavleracrsvllnapseapqivrgasedvrkqpynltiawfrmggncaipitvmeytec
synkslgacpirtqprwnyydsfsavsednlgflmhapafetagtylrlvkindwteitq
filehrakgsckyalplrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslki
agwhgpkapytstllppelsetpnatqpelapedpedsalledpvgt

    Sequence, based on observed residues (ATOM records): (download) 
    >1l2gB (B:)
pnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvyyavleracrsvllna
pseapqivrgasedvrkqpynltiawfrmggncaipitvmeytecsynkslgacpirtqp
rwnyydsfsavsednlgflmhapafetagtylrlvkindwteitqfilehrakgsckyal
plrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslkiagwhgpkapytstll
pp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1l2gC (C:)
dpkyaladaslkmadpnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvy
yavleracrsvllnapseapqivrgasedvrkqpynltiawfrmggncaipitvmeytec
synkslgacpirtqprwnyydsfsavsednlgflmhapafetagtylrlvkindwteitq
filehrakgsckyalplrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslki
agwhgpkapytstllppelsetpnatqpelapedpedsalledpvgt

    Sequence, based on observed residues (ATOM records): (download) 
    >1l2gC (C:)
pnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvyyavleracrsvllna
pseapqivrgasedvrkqpynltiawfrmggncaipitvmeytecsynkslgacpirtqp
rwnyydsfsavsednlgflmhapafetagtylrlvkindwteitqfilehrakgsckyal
plrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslkiagwhgpkapytstll
pp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1l2gD (D:)
dpkyaladaslkmadpnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvy
yavleracrsvllnapseapqivrgasedvrkqpynltiawfrmggncaipitvmeytec
synkslgacpirtqprwnyydsfsavsednlgflmhapafetagtylrlvkindwteitq
filehrakgsckyalplrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslki
agwhgpkapytstllppelsetpnatqpelapedpedsalledpvgt

    Sequence, based on observed residues (ATOM records): (download) 
    >1l2gD (D:)
pnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvyyavleracrsvllna
pseapqivrgasedvrkqpynltiawfrmggncaipitvmeytecsynkslgacpirtqp
rwnyydsfsavsednlgflmhapafetagtylrlvkindwteitqfilehrakgsckyal
plrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslkiagwhgpkapytstll
pp