PDB entry 1kxq

View 1kxq on RCSB PDB site
Description: Camelid VHH Domain in Complex with Porcine Pancreatic alpha-Amylase
Class: hydrolase, immune system
Keywords: alpha 8 beta 8, beta barrel
Deposited on 2002-02-01, released 2002-06-19
The last revision prior to the SCOP 1.75 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.197
AEROSPACI score: 0.64 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-amylase, pancreatic
    Species: SUS SCROFA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00690 (0-495)
      • see remark 999 (242)
      • see remark 999 (309)
      • see remark 999 (322)
      • see remark 999 (403)
    Domains in SCOP 1.75: d1kxqa1, d1kxqa2
  • Chain 'B':
    Compound: alpha-amylase, pancreatic
    Species: SUS SCROFA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00690 (0-495)
      • see remark 999 (242)
      • see remark 999 (309)
      • see remark 999 (322)
      • see remark 999 (403)
    Domains in SCOP 1.75: d1kxqb1, d1kxqb2
  • Chain 'C':
    Compound: alpha-amylase, pancreatic
    Species: SUS SCROFA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00690 (0-495)
      • see remark 999 (242)
      • see remark 999 (309)
      • see remark 999 (322)
      • see remark 999 (403)
    Domains in SCOP 1.75: d1kxqc1, d1kxqc2
  • Chain 'D':
    Compound: alpha-amylase, pancreatic
    Species: SUS SCROFA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00690 (0-495)
      • see remark 999 (242)
      • see remark 999 (309)
      • see remark 999 (322)
      • see remark 999 (403)
    Domains in SCOP 1.75: d1kxqd1, d1kxqd2
  • Chain 'E':
    Compound: antibody VHH fragment CABAMD9
    Species: CAMELUS DROMEDARIUS
    Domains in SCOP 1.75: d1kxqe_
  • Chain 'F':
    Compound: antibody VHH fragment CABAMD9
    Species: CAMELUS DROMEDARIUS
    Domains in SCOP 1.75: d1kxqf_
  • Chain 'G':
    Compound: antibody VHH fragment CABAMD9
    Species: CAMELUS DROMEDARIUS
    Domains in SCOP 1.75: d1kxqg_
  • Chain 'H':
    Compound: antibody VHH fragment CABAMD9
    Species: CAMELUS DROMEDARIUS
    Domains in SCOP 1.75: d1kxqh_
  • Heterogens: CA, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kxqA (A:)
qyapqtqsgrtsivhlfewrwvdialecerylgpkgfggvqvsppnenivvtnpsrpwwe
ryqpvsyklctrsgnenefrdmvtrcnnvgvriyvdavinhmcgsgaaagtgttcgsycn
pgsrefpavpysawdfndgkcktasggiesyndpyqvrdcqlvglldlalekdyvrsmia
dylnklidigvagfridaskhmwpgdikavldklhnlntnwfpagsrpfifqevidlgge
aiksseyfgngrvtefkygaklgtvvrkwsgekmsylknwgegwgfmpsdralvfvdnhd
nqrghgaggssiltfwdarlykiavgfmlahpygftrvmssyrwarnfvngedvndwigp
pnnngvikevtinadttcgndwvcehrwreirnmvwfrnvvdgqpfanwwdngsnqvafg
rgnrgfivfnnddwqlsstlqtglpggtycdvisgdkvgnsctgikvyvssdgtaqfsis
nsaedpfiaihaeskl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kxqB (B:)
qyapqtqsgrtsivhlfewrwvdialecerylgpkgfggvqvsppnenivvtnpsrpwwe
ryqpvsyklctrsgnenefrdmvtrcnnvgvriyvdavinhmcgsgaaagtgttcgsycn
pgsrefpavpysawdfndgkcktasggiesyndpyqvrdcqlvglldlalekdyvrsmia
dylnklidigvagfridaskhmwpgdikavldklhnlntnwfpagsrpfifqevidlgge
aiksseyfgngrvtefkygaklgtvvrkwsgekmsylknwgegwgfmpsdralvfvdnhd
nqrghgaggssiltfwdarlykiavgfmlahpygftrvmssyrwarnfvngedvndwigp
pnnngvikevtinadttcgndwvcehrwreirnmvwfrnvvdgqpfanwwdngsnqvafg
rgnrgfivfnnddwqlsstlqtglpggtycdvisgdkvgnsctgikvyvssdgtaqfsis
nsaedpfiaihaeskl

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kxqC (C:)
qyapqtqsgrtsivhlfewrwvdialecerylgpkgfggvqvsppnenivvtnpsrpwwe
ryqpvsyklctrsgnenefrdmvtrcnnvgvriyvdavinhmcgsgaaagtgttcgsycn
pgsrefpavpysawdfndgkcktasggiesyndpyqvrdcqlvglldlalekdyvrsmia
dylnklidigvagfridaskhmwpgdikavldklhnlntnwfpagsrpfifqevidlgge
aiksseyfgngrvtefkygaklgtvvrkwsgekmsylknwgegwgfmpsdralvfvdnhd
nqrghgaggssiltfwdarlykiavgfmlahpygftrvmssyrwarnfvngedvndwigp
pnnngvikevtinadttcgndwvcehrwreirnmvwfrnvvdgqpfanwwdngsnqvafg
rgnrgfivfnnddwqlsstlqtglpggtycdvisgdkvgnsctgikvyvssdgtaqfsis
nsaedpfiaihaeskl

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kxqD (D:)
qyapqtqsgrtsivhlfewrwvdialecerylgpkgfggvqvsppnenivvtnpsrpwwe
ryqpvsyklctrsgnenefrdmvtrcnnvgvriyvdavinhmcgsgaaagtgttcgsycn
pgsrefpavpysawdfndgkcktasggiesyndpyqvrdcqlvglldlalekdyvrsmia
dylnklidigvagfridaskhmwpgdikavldklhnlntnwfpagsrpfifqevidlgge
aiksseyfgngrvtefkygaklgtvvrkwsgekmsylknwgegwgfmpsdralvfvdnhd
nqrghgaggssiltfwdarlykiavgfmlahpygftrvmssyrwarnfvngedvndwigp
pnnngvikevtinadttcgndwvcehrwreirnmvwfrnvvdgqpfanwwdngsnqvafg
rgnrgfivfnnddwqlsstlqtglpggtycdvisgdkvgnsctgikvyvssdgtaqfsis
nsaedpfiaihaeskl

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kxqE (E:)
qvqlvesgggsvqaggslslscaastytdtvgwfrqapgkeregvaaiyrrtgytysads
vkgrftlsqdnnkntvylqmnslkpedtgiyycatgnsvrlaswegyfywgqgtqvtvss

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kxqF (F:)
qvqlvesgggsvqaggslslscaastytdtvgwfrqapgkeregvaaiyrrtgytysads
vkgrftlsqdnnkntvylqmnslkpedtgiyycatgnsvrlaswegyfywgqgtqvtvss

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kxqG (G:)
qvqlvesgggsvqaggslslscaastytdtvgwfrqapgkeregvaaiyrrtgytysads
vkgrftlsqdnnkntvylqmnslkpedtgiyycatgnsvrlaswegyfywgqgtqvtvss

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kxqH (H:)
qvqlvesgggsvqaggslslscaastytdtvgwfrqapgkeregvaaiyrrtgytysads
vkgrftlsqdnnkntvylqmnslkpedtgiyycatgnsvrlaswegyfywgqgtqvtvss