PDB entry 1kno
View 1kno on RCSB PDB site
Description: crystal structure of the complex of a catalytic antibody fab with a transition state analog: structural similarities in esterase-like abzymes
Class: catalytic antibody
Keywords: catalytic antibody
Deposited on
1995-09-11, released
1996-01-29
The last revision prior to the SCOP 1.73 freeze date was dated
1996-01-29, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.2
AEROSPACI score: 0.18
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: igg2a fab fragment cnj206
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
- GB AAG43418 (3-213)
- conflict (27)
- conflict (29-31)
- conflict (33)
- conflict (38)
- conflict (49-50)
- conflict (52)
- conflict (83)
- conflict (95)
- insertion (98)
- conflict (101-106)
Domains in SCOP 1.73: d1knoa1, d1knoa2 - Chain 'B':
Compound: igg2a fab fragment cnj206
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
- GB AAC98952 (0-219)
- conflict (12)
- conflict (17)
- conflict (29)
- conflict (31-32)
- conflict (34)
- conflict (39)
- conflict (43)
- conflict (49)
- conflict (51)
- conflict (54-55)
- insertion (57)
- conflict (58)
- conflict (60)
- conflict (64)
- conflict (74)
- conflict (79)
- conflict (81)
- conflict (83)
- insertion (98)
- conflict (100-102)
- conflict (104-106)
Domains in SCOP 1.73: d1knob1, d1knob2 - Chain 'C':
Compound: igg2a fab fragment cnj206
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
- GB AAG43418 (3-213)
- conflict (27)
- conflict (29-31)
- conflict (33)
- conflict (38)
- conflict (49-50)
- conflict (52)
- conflict (83)
- conflict (95)
- insertion (98)
- conflict (101-106)
Domains in SCOP 1.73: d1knoc1, d1knoc2 - Chain 'D':
Compound: igg2a fab fragment cnj206
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
- GB AAC98952 (0-219)
- conflict (12)
- conflict (17)
- conflict (29)
- conflict (31-32)
- conflict (34)
- conflict (39)
- conflict (43)
- conflict (49)
- conflict (51)
- conflict (54-55)
- insertion (57)
- conflict (58)
- conflict (60)
- conflict (64)
- conflict (74)
- conflict (79)
- conflict (81)
- conflict (83)
- insertion (98)
- conflict (100-102)
- conflict (104-106)
Domains in SCOP 1.73: d1knod1, d1knod2 - Chain 'E':
Compound: igg2a fab fragment cnj206
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
- GB AAG43418 (3-213)
- conflict (27)
- conflict (29-31)
- conflict (33)
- conflict (38)
- conflict (49-50)
- conflict (52)
- conflict (83)
- conflict (95)
- insertion (98)
- conflict (101-106)
Domains in SCOP 1.73: d1knoe1, d1knoe2 - Chain 'F':
Compound: igg2a fab fragment cnj206
Species: Mus musculus
Database cross-references and differences (RAF-indexed):
- GB AAC98952 (0-219)
- conflict (12)
- conflict (17)
- conflict (29)
- conflict (31-32)
- conflict (34)
- conflict (39)
- conflict (43)
- conflict (49)
- conflict (51)
- conflict (54-55)
- insertion (57)
- conflict (58)
- conflict (60)
- conflict (64)
- conflict (74)
- conflict (79)
- conflict (81)
- conflict (83)
- insertion (98)
- conflict (100-102)
- conflict (104-106)
Domains in SCOP 1.73: d1knof1, d1knof2 - Heterogens: ZN, PNP
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1knoA (A:)
qiqmtqspsslsaslgervsltcrasqeisgylswlqqkpdgtikrliyaastldsgvpk
rfsgsrsgsdysltisslesedfadyyclqyasspytfgggtkleilradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1knoB (B:)
dvklvesggglvqpggsrklscaasgftfssfgmhwvrqapekglewvayissgsstiyy
adtvkgrftisrdnpkntlflqmtslrsedtamyycargdyygsrgaywgqgtlvtvsaa
kttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdl
ytlsssvtvtsstwpsqsitcnvahpasstkvdkkieprg
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1knoC (C:)
qiqmtqspsslsaslgervsltcrasqeisgylswlqqkpdgtikrliyaastldsgvpk
rfsgsrsgsdysltisslesedfadyyclqyasspytfgggtkleilradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1knoD (D:)
dvklvesggglvqpggsrklscaasgftfssfgmhwvrqapekglewvayissgsstiyy
adtvkgrftisrdnpkntlflqmtslrsedtamyycargdyygsrgaywgqgtlvtvsaa
kttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdl
ytlsssvtvtsstwpsqsitcnvahpasstkvdkkieprg
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1knoE (E:)
qiqmtqspsslsaslgervsltcrasqeisgylswlqqkpdgtikrliyaastldsgvpk
rfsgsrsgsdysltisslesedfadyyclqyasspytfgggtkleilradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1knoF (F:)
dvklvesggglvqpggsrklscaasgftfssfgmhwvrqapekglewvayissgsstiyy
adtvkgrftisrdnpkntlflqmtslrsedtamyycargdyygsrgaywgqgtlvtvsaa
kttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdl
ytlsssvtvtsstwpsqsitcnvahpasstkvdkkieprg