PDB entry 1kjm

View 1kjm on RCSB PDB site
Description: TAP-A-associated rat MHC class I molecule
Class: immune system
Keywords: peptide-MHC complex, heterodimer, extracellular domain
Deposited on 2001-12-04, released 2002-12-18
The last revision prior to the SCOP 1.73 freeze date was dated 2004-01-13, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.249
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RT1 class I histocompatibility antigen, AA alpha chain, heavy chain
    Species: Rattus norvegicus
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16391 (0-275)
      • his tag (276)
      • his tag (261-262)
    Domains in SCOP 1.73: d1kjma1, d1kjma2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Rattus norvegicus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1kjmb_
  • Chain 'P':
    Compound: B6 Peptide
    Species: synthetic, synthetic
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1kjmA (A:)
gshslryfytavsrpglgeprfiavgyvddtefvrfdsdaenprmeprarwmeregpeyw
eqqtriakeweqiyrvdlrtlrgyynqseggshtiqemygcdvgsdgsllrgyrqdaydg
rdyialnedlktwtaadfaaqitrnkweraryaerlraylegtcvewlsrylelgketll
rsdppeahvtlhprpegdvtlrcwalgfypaditltwqlngedltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrveheglpkplsqrwepllehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1kjmA (A:)
gshslryfytavsrpglgeprfiavgyvddtefvrfdsdaenprmeprarwmeregpeyw
eqqtriakeweqiyrvdlrtlrgyynqseggshtiqemygcdvgsdgsllrgyrqdaydg
rdyialnedlktwtaadfaaqitrnkweraryaerlraylegtcvewlsrylelgketll
rsdppeahvtlhprpegdvtlrcwalgfypaditltwqlngedltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrveheglpkplsqrwepl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1kjmB (B:)
miqktpqiqvysrhppengkpnflncyvsqfhppqieiellkngkkipniemsdlsfskd
wsfyilahteftptetdvyacrvkhvtlkepktvtwdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >1kjmB (B:)
iqktpqiqvysrhppengkpnflncyvsqfhppqieiellkngkkipniemsdlsfskdw
sfyilahteftptetdvyacrvkhvtlkepktvtwdrdm

  • Chain 'P':
    No sequence available.