PDB entry 1k8g

View 1k8g on RCSB PDB site
Description: Crystal Structure of the N-terminal domain of Oxytricha nova telomere end binding protein alpha subunit both uncomplexed and complexed with telomeric ssDNA
Class: DNA binding protein/DNA
Keywords: Protein-DNA Complex, telomeres, sequence specific ssDNA binding protein, OB folds, structure, protein single strand DNA interactions, 3'-DNA end binding protein, telomere end binding protein
Deposited on 2001-10-24, released 2001-12-20
The last revision prior to the SCOP 1.75 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.246
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Telomere-binding protein alpha subunit
    Species: Oxytricha nova
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1k8ga1, d1k8ga2
  • Chain 'B':
    Compound: Telomere-binding protein alpha subunit
    Species: Oxytricha nova
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1k8gb1, d1k8gb2
  • Chain 'C':
    Compound: Telomere-binding protein alpha subunit
    Species: Oxytricha nova
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1k8gc1, d1k8gc2
  • Chain 'D':
    Compound: 5'-d(tp*tp*gp*gp*gp*g)-3'
  • Chain 'E':
    Compound: 5'-d(tp*tp*gp*gp*gp*g)-3'
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1k8gA (A:)
mstaakqnrstsrvskkktaapkegaakksdkghkyeyvelakasltsaqpqhfyavvid
atfpyktnqeryicslkivdptlylkqqkgagdasdyatlvlyakrfedlpiihragdii
rvhratlrlyngqrqfnanvfyssswalfstdkrsvtqeinnqdavsdttpfsfsskhat
iekneisilqnlrkwanqyfssysvissdmytalnkaqaqkgdfdvvakilqvheldeyt
nelklkdasgqvfytlslklkfphvrtgevvrirsatydetstqkkvlilshysniitfi
qssklakelrakiqddhsve

    Sequence, based on observed residues (ATOM records): (download) 
    >1k8gA (A:)
yeyvelakasltsaqpqhfyavvidatfpyktyicslkivdptlylkqsdyatlvlyakr
fedlpiihragdiirvhratlrlyngqrqfnanvfyssswalfstdkrsvtqeinnqdav
sdttpfsfsskhatiekneisilqnlrkwanqyfssysvissdmytalnkaqaqkgdfdv
vakilqvheldeytnelklkdasgqvfytlslklkfphvrtgevvrirsatydetstqkk
vlilshysniitfiqssklakelrakiqd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1k8gB (B:)
mstaakqnrstsrvskkktaapkegaakksdkghkyeyvelakasltsaqpqhfyavvid
atfpyktnqeryicslkivdptlylkqqkgagdasdyatlvlyakrfedlpiihragdii
rvhratlrlyngqrqfnanvfyssswalfstdkrsvtqeinnqdavsdttpfsfsskhat
iekneisilqnlrkwanqyfssysvissdmytalnkaqaqkgdfdvvakilqvheldeyt
nelklkdasgqvfytlslklkfphvrtgevvrirsatydetstqkkvlilshysniitfi
qssklakelrakiqddhsve

    Sequence, based on observed residues (ATOM records): (download) 
    >1k8gB (B:)
yeyvelakasltsaqpqhfyavvidatfpyktnqeryicslkivdptlylkqqsdyatlv
lyakrfedlpiihragdiirvhratlrlyngqrqfnanvfyssswalfstdkrsvtqein
nqdavsdttpfsfsskhatiekneisilqnlrkwanqyfssysvissdmytalnkaqaqk
gdfdvvakilqvheldeytnelklkdasgqvfytlslklkfphvrtgevvrirsatydet
stqkkvlilshysniitfiqssklakelrakiqdd

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1k8gC (C:)
mstaakqnrstsrvskkktaapkegaakksdkghkyeyvelakasltsaqpqhfyavvid
atfpyktnqeryicslkivdptlylkqqkgagdasdyatlvlyakrfedlpiihragdii
rvhratlrlyngqrqfnanvfyssswalfstdkrsvtqeinnqdavsdttpfsfsskhat
iekneisilqnlrkwanqyfssysvissdmytalnkaqaqkgdfdvvakilqvheldeyt
nelklkdasgqvfytlslklkfphvrtgevvrirsatydetstqkkvlilshysniitfi
qssklakelrakiqddhsve

    Sequence, based on observed residues (ATOM records): (download) 
    >1k8gC (C:)
yeyvelakasltsaqpqhfyavvidatfpyktnqeryicslkivdptlylkqqkgasdya
tlvlyakrfedlpiihragdiirvhratlrlyngqrqfnanvfyssswalfstdkrsvtq
einnqdavsdttpfsfsskhatiekneisilqnlrkwanqyfssysvissdmytalnkaq
aqkgdfdvvakilqvheldeytnelklkdasgqvfytlslklkfphvrtgevvrirsaty
detstqkkvlilshysniitfiqssklakelrakiqdd

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.