PDB entry 1k5n

View 1k5n on RCSB PDB site
Description: hla-b*2709 bound to nona-peptide m9
Class: immune system
Keywords: MHC(major histocompatibility complex), hla(human leukocyte antigen)
Deposited on 2001-10-11, released 2002-10-30
The last revision prior to the SCOP 1.73 freeze date was dated 2002-12-23, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.09 Å
R-factor: 0.123
AEROSPACI score: 0.95 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: major histocompatibility complex molecule HLA-B*2709
    Species: HOMO SAPIENS
    Gene: HLA-B or HLAB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1k5na1, d1k5na2
  • Chain 'B':
    Compound: beta-2-microglobulin, light chain
    Species: HOMO SAPIENS
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • cloning artifact (0)
    Domains in SCOP 1.73: d1k5nb_
  • Chain 'C':
    Compound: nonameric model peptide m9
    Species: synthetic, synthetic
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1k5nA (A:)
    gshsmryfhtsvsrpgrgeprfitvgyvddtlfvrfdsdaaspreeprapwieqegpeyw
    dretqickakaqtdredlrtllryynqseagshtlqnmygcdvgpdgrllrgyhqhaydg
    kdyialnedlsswtaadtaaqitqrkweaarvaeqlraylegecvewlrrylengketlq
    radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1k5nB (B:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.