PDB entry 1jri

View 1jri on RCSB PDB site
Description: The Crystal Structure of an Sm-like Archaeal Protein with Two Heptamers in the Asymmetric Unit.
Class: structural genomics, unknown function
Keywords: structural genomics, heptameric, 35-stranded beta toroid, UNKNOWN FUNCTION
Deposited on 2001-08-13, released 2002-02-13
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.199
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-82)
    Domains in SCOPe 2.06: d1jria1, d1jria2
  • Chain 'B':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-84)
    Domains in SCOPe 2.06: d1jrib1, d1jrib2
  • Chain 'C':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-82)
    Domains in SCOPe 2.06: d1jric1, d1jric2
  • Chain 'D':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-82)
    Domains in SCOPe 2.06: d1jrid1, d1jrid2
  • Chain 'E':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81)
    Domains in SCOPe 2.06: d1jrie1, d1jrie2
  • Chain 'F':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-82)
    Domains in SCOPe 2.06: d1jrif1, d1jrif2
  • Chain 'G':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-83)
    Domains in SCOPe 2.06: d1jrig1, d1jrig2
  • Chain 'H':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81)
    Domains in SCOPe 2.06: d1jrih1, d1jrih2
  • Chain 'I':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-82)
    Domains in SCOPe 2.06: d1jrii1, d1jrii2
  • Chain 'J':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1jrij_
  • Chain 'K':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
    Domains in SCOPe 2.06: d1jrik_
  • Chain 'L':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-83)
    Domains in SCOPe 2.06: d1jril1, d1jril2
  • Chain 'M':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-84)
    Domains in SCOPe 2.06: d1jrim1, d1jrim2
  • Chain 'N':
    Compound: Sm-like Archaeal Protein 1 (SmAP1)
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-82)
    Domains in SCOPe 2.06: d1jrin1, d1jrin2
  • Heterogens: CL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1jriA (A:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriA (A:)
qrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtvli
rgdnivyisrgk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1jriB (B:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriB (B:)
qrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtvli
rgdnivyisrgkla

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1jriC (C:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriC (C:)
vnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgt
vlirgdnivyisrgk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1jriD (D:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriD (D:)
vqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtvl
irgdnivyisrgk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1jriE (E:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriE (E:)
vnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgt
vlirgdnivyisrg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1jriF (F:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriF (F:)
vqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtvl
irgdnivyisrgk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1jriG (G:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriG (G:)
vnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgt
vlirgdnivyisrgkl

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1jriH (H:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriH (H:)
nvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtv
lirgdnivyisrg

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1jriI (I:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriI (I:)
qrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtvli
rgdnivyisrgk

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1jriJ (J:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriJ (J:)
nvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtv
lirgdnivyis

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1jriK (K:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriK (K:)
vqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtvl
irgdnivyisr

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1jriL (L:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriL (L:)
vnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgt
vlirgdnivyisrgkl

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1jriM (M:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriM (M:)
qrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtvli
rgdnivyisrgkla

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1jriN (N:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgkla

    Sequence, based on observed residues (ATOM records): (download) 
    >1jriN (N:)
vnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgt
vlirgdnivyisrgk