PDB entry 1jp5
View 1jp5 on RCSB PDB site
Description: Crystal structure of the single-chain Fv fragment 1696 in complex with the epitope peptide corresponding to N-terminus of HIV-1 protease
Class: immune system
Keywords: antibody-antigen complex, HIV PR inhibiting antibody, IMMUNE SYSTEM
Deposited on
2001-08-01, released
2001-10-12
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-19.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.229
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: single-chain Fv fragment 1696
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1jp5a1, d1jp5a2 - Chain 'B':
Compound: single-chain Fv fragment 1696
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1jp5b1, d1jp5b2 - Chain 'C':
Compound: epitope peptide corresponding to N-terminus of HIV-1 protease
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: epitope peptide corresponding to N-terminus of HIV-1 protease
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1jp5A (A:)
dilmtqtplylpvslgdqasiscrssqtivhnngntylewylqkpgqspqlliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgiyycfqgshfpptfgggtkleikggggsggg
gsggggsevqlqqsgpelkkpgetvkisckatnyaftdysmhwvkqapggdlkyvgwint
etdeptfaddfkgrfafsldtststaflqinnlknedtatyfcvrdrhdygeiftywgqg
ttvtvss
Sequence, based on observed residues (ATOM records): (download)
>1jp5A (A:)
dilmtqtplylpvslgdqasiscrssqtivhnngntylewylqkpgqspqlliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgiyycfqgshfpptfgggtkleikevqlqqsg
pelkkpgetvkisckatnyaftdysmhwvkqapggdlkyvgwintetdeptfaddfkgrf
afsldtststaflqinnlknedtatyfcvrdrhdygeiftywgqgttvtvss
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1jp5B (B:)
dilmtqtplylpvslgdqasiscrssqtivhnngntylewylqkpgqspqlliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgiyycfqgshfpptfgggtkleikggggsggg
gsggggsevqlqqsgpelkkpgetvkisckatnyaftdysmhwvkqapggdlkyvgwint
etdeptfaddfkgrfafsldtststaflqinnlknedtatyfcvrdrhdygeiftywgqg
ttvtvss
Sequence, based on observed residues (ATOM records): (download)
>1jp5B (B:)
dilmtqtplylpvslgdqasiscrssqtivhnngntylewylqkpgqspqlliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgiyycfqgshfpptfgggtkleikevqlqqsg
pelkkpgetvkisckatnyaftdysmhwvkqapggdlkyvgwintetdeptfaddfkgrf
afsldtststaflqinnlknedtatyfcvrdrhdygeiftywgqgttvtvss
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.