PDB entry 1jma

View 1jma on RCSB PDB site
Description: crystal structure of the herpes simplex virus glycoprotein d bound to the cellular receptor hvea/hvem
Class: Viral protein
Keywords: V-type Ig molecule and TNFR superfamily
Deposited on 2001-07-17, released 2001-09-26
The last revision prior to the SCOP 1.73 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.236
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycoprotein d
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1jmaa_
  • Chain 'B':
    Compound: herpesvirus entry mediator
    Species: HERPES SIMPLEX VIRUS 1
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1jmab1, d1jmab2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1jmaA (A:)
kyaladaslkmadpnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvyya
vleracrsvllnapseapqivrgasedvrkqpynltiawfrmggncaipitvmeytecsy
nkslgacpirtqprwnyydsfsavsednlgflmhapafetagtylrlvkindwteitqfi
lehrakgsckyalplrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslkiag
whgpkapytstllppelsetpnatqpelapedpedsalledpvgthhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1jmaA (A:)
kyaladaslkmadpnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvyya
vleracrsvllnapseapqivrgasedvrkqpynltiawfrmggncaipitvmeytecsy
nkslgacpirtqprwnyydsfsavsednlgflmhapafetagtylrlvkindwteitqfi
lehrakgsckyalplrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslkiag
whgpkapytstllppelse

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1jmaB (B:)
lpsckedeypvgseccpkcspgyrvkeacgeltgtvcepcppgtyiahlnglskclqcqm
cdpamglrasrncsrtenavcgcspghfcivqdgdhcaacrayatsspgqrvqkggtesq
dtlcqncppgtfspngtleecqhqtkcswlvtkagagtssshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1jmaB (B:)
ckedeypvgseccpkcspgyrvkeacgeltgtvcepcppgtyiahlnglskclqcqmcdp
amglrasrncsrtenavcgcspghfcivqdhcaacrayat