PDB entry 1jgd

View 1jgd on RCSB PDB site
Description: HLA-B*2709 bound to deca-peptide s10R
Class: immune system
Keywords: MHC (Major Histocompatibility Complex), HLA (Human Leukocyte Antigen), IMMUNE SYSTEM
Deposited on 2001-06-25, released 2003-07-01
The last revision prior to the SCOPe 2.02 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.17
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: human lymphocyte antigen hla-b27
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-B or HLAB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1jgda1, d1jgda2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • cloning artifact (0)
    Domains in SCOPe 2.02: d1jgdb_
  • Chain 'C':
    Compound: peptide s10R
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1JGD (0-9)
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1jgdA (A:)
    gshsmryfhtsvsrpgrgeprfitvgyvddtlfvrfdsdaaspreeprapwieqegpeyw
    dretqickakaqtdredlrtllryynqseagshtlqnmygcdvgpdgrllrgyhqhaydg
    kdyialnedlsswtaadtaaqitqrkweaarvaeqlraylegecvewlrrylengketlq
    radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1jgdB (B:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.