PDB entry 1jbm

View 1jbm on RCSB PDB site
Description: Heptameric crystal structure of Mth649, an Sm-like archaeal protein from Methanobacterium thermautotrophicum
Class: structural genomics
Keywords: ring-shaped homoheptamer, all beta-strand, STRUCTURAL GENOMICS
Deposited on 2001-06-06, released 2003-03-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.196
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: putative snrnp sm-like protein
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649 ORF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-85)
    Domains in SCOPe 2.08: d1jbma1, d1jbma2
  • Chain 'B':
    Compound: putative snrnp sm-like protein
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649 ORF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81)
    Domains in SCOPe 2.08: d1jbmb1, d1jbmb2
  • Chain 'C':
    Compound: putative snrnp sm-like protein
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649 ORF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-85)
    Domains in SCOPe 2.08: d1jbmc1, d1jbmc2
  • Chain 'D':
    Compound: putative snrnp sm-like protein
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649 ORF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
    Domains in SCOPe 2.08: d1jbmd_
  • Chain 'E':
    Compound: putative snrnp sm-like protein
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649 ORF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-82)
    Domains in SCOPe 2.08: d1jbme1, d1jbme2
  • Chain 'F':
    Compound: putative snrnp sm-like protein
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649 ORF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-82)
    Domains in SCOPe 2.08: d1jbmf1, d1jbmf2
  • Chain 'G':
    Compound: putative snrnp sm-like protein
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: Mth0649 ORF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26745 (Start-80)
      • conflict (80)
      • insertion (81-84)
    Domains in SCOPe 2.08: d1jbmg1, d1jbmg2
  • Heterogens: EDO, ACY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1jbmA (A:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgklaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1jbmA (A:)
vnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgt
vlirgdnivyisrgklaa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1jbmB (B:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgklaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1jbmB (B:)
nvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtv
lirgdnivyisrg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1jbmC (C:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgklaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1jbmC (C:)
nvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtv
lirgdnivyisrgklaa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1jbmD (D:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgklaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1jbmD (D:)
vqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtvl
irgdnivyisr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1jbmE (E:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgklaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1jbmE (E:)
vnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgt
vlirgdnivyisrgk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1jbmF (F:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgklaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1jbmF (F:)
vqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtvl
irgdnivyisrgk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1jbmG (G:)
midvssqrvnvqrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledg
evtrrlgtvlirgdnivyisrgklaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1jbmG (G:)
qrpldalgnslnspviiklkgdrefrgvlksfdlhmnlvlndaeeledgevtrrlgtvli
rgdnivyisrgkla