PDB entry 1j5a
View 1j5a on RCSB PDB site
Description: structural basis for the interaction of antibiotics with the peptidyl transferase center in eubacteria
Class: ribosome
Keywords: ribosome, 50s, 23s, 5s, antibiotics, clarithromycin, peptidyl transferase center
Deposited on
2002-03-06, released
2002-03-08
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.273
AEROSPACI score: 0.01
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 23s rRNA
Species: Deinococcus radiodurans [TaxId:1299]
- Chain 'K':
Compound: ribosomal protein l4
Species: Deinococcus radiodurans [TaxId:1299]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1j5ak_ - Chain 'L':
Compound: ribosomal protein l22
Species: Deinococcus radiodurans [TaxId:1299]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1j5al_ - Chain 'M':
Compound: ribosomal protein l32
Species: Deinococcus radiodurans [TaxId:1299]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1j5am_ - Heterogens: CTY, MG
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'K':
Sequence, based on SEQRES records: (download)
>1j5aK (K:)
maqinvigqnggrtielplpevnsgvlhevvtwqlasrrrgtastrtraqvsktgrkmyg
qkgtgnarhgdrsvptfvgggvafgpkprsydytlprqvrqlglamaiasrqeggklvav
dgfdiadaktknfiswakqngldgtekvllvtddentrraarnvswvsvlpvagvnvydi
lrhdrlvidaaaleiveeeageeqq
Sequence, based on observed residues (ATOM records): (download)
>1j5aK (K:)
aqinvigqnggrtielplpevnsgvlhevvtwqlasrrrgtastrtraqvsktgrkmygq
kgtgnarhgdrsvptfvgggvafgpkprsydytlprqvrqlglamaiasrqeggklvavd
gfdiadaktknfiswakqngldgtekvllvtddentrraarnvswvsvlpvagvnvydil
rhdrlvidaaaleivee
- Chain 'L':
Sequence, based on SEQRES records: (download)
>1j5aL (L:)
mtapeqtfrnkkqrkqqvklrkpgfavakyvrmsprkvrlvvdvirgksvqdaedllrfi
prsasepvakvlnsakanalhndemledrlfvkeayvdagptlkrliprargsaniikkr
tshitiivaekgnk
Sequence, based on observed residues (ATOM records): (download)
>1j5aL (L:)
eqtfrnkkqrkqqvklrkpgfavakyvrmsprkvrlvvdvirgksvqdaedllrfiprsa
sepvakvlnsakanalhndemledrlfvkeayvdagptlkrliprargsaniikkrtshi
tiivaekgnk
- Chain 'M':
Sequence, based on SEQRES records: (download)
>1j5aM (M:)
makhpvpkkktskskrdmrrshhaltapnltecpqchgkklshhicpncgyydgrqvlav
Sequence, based on observed residues (ATOM records): (download)
>1j5aM (M:)
akhpvpkkktskskrdmrrshhaltapnltecpqchgkklshhicpncgyydgrqvla