PDB entry 1ipk

View 1ipk on RCSB PDB site
Description: crystal structures of recombinant and native soybean beta-conglycinin beta homotrimers
Class: sugar binding protein
Keywords: soybean, storage protein, vicilin, SUGAR BINDING PROTEIN
Deposited on 2001-05-16, released 2002-05-16
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.205
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: beta-conglycinin, beta chain
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P25974
      • conflict (27)
    Domains in SCOPe 2.01: d1ipka1, d1ipka2
  • Chain 'B':
    Compound: beta-conglycinin, beta chain
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P25974
      • conflict (27)
    Domains in SCOPe 2.01: d1ipkb1, d1ipkb2
  • Chain 'C':
    Compound: beta-conglycinin, beta chain
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P25974
      • conflict (27)
    Domains in SCOPe 2.01: d1ipkc1, d1ipkc2

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ipkA (A:)
lkvredennpfyfrssnsfqtlfenqngrirllqrfnkrspqlenlrdyrivqfqskpnt
illphhadadfllfvlsgrailtlvnnddrdsynlhpgdaqripagttyylvnphdhqnl
kiiklaipvnkpgryddfflsstqaqqsylqgfshniletsfhsefeeinrvlfgeeeeq
rqqegvivelskeqirqlsrraksssrktissedepfnlrsrnpiysnnfgkffeitpek
npqlrdldiflssvdinegalllphfnskaivilvinegdanielvgikeqqqkqkqeee
plevqryraelseddvfvipaaypfvvnatsnlnflafginaennqrnflagekdnvvrq
ierqvqelafpgsaqdverllkkqresyfvdaqpqqkeegskgrkgpfpsilgaly

    Sequence, based on observed residues (ATOM records): (download) 
    >1ipkA (A:)
nnpfyfrssnsfqtlfenqngrirllqrfnkrspqlenlrdyrivqfqskpntillphha
dadfllfvlsgrailtlvnnddrdsynlhpgdaqripagttyylvnphdhqnlkiiklai
pvnkpgryddfflsstqaqqsylqgfshniletsfhsefeeinrvlfqegvivelskeqi
rqlsrraksssrktissedepfnlrsrnpiysnnfgkffeitpeknpqlrdldiflssvd
inegalllphfnskaivilvinegdanielvgikeqplevqryraelseddvfvipaayp
fvvnatsnlnflafginaennqrnflagekdnvvrqierqvqelafpgsaqdverllkkq
resyfvda

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ipkB (B:)
lkvredennpfyfrssnsfqtlfenqngrirllqrfnkrspqlenlrdyrivqfqskpnt
illphhadadfllfvlsgrailtlvnnddrdsynlhpgdaqripagttyylvnphdhqnl
kiiklaipvnkpgryddfflsstqaqqsylqgfshniletsfhsefeeinrvlfgeeeeq
rqqegvivelskeqirqlsrraksssrktissedepfnlrsrnpiysnnfgkffeitpek
npqlrdldiflssvdinegalllphfnskaivilvinegdanielvgikeqqqkqkqeee
plevqryraelseddvfvipaaypfvvnatsnlnflafginaennqrnflagekdnvvrq
ierqvqelafpgsaqdverllkkqresyfvdaqpqqkeegskgrkgpfpsilgaly

    Sequence, based on observed residues (ATOM records): (download) 
    >1ipkB (B:)
npfyfrssnsfqtlfenqngrirllqrfnkrspqlenlrdyrivqfqskpntillphhad
adfllfvlsgrailtlvnnddrdsynlhpgdaqripagttyylvnphdhqnlkiiklaip
vnkpgryddfflsstqaqqsylqgfshniletsfhsefeeinrvlfqegvivelskeqir
qlsrraksssrktissedepfnlrsrnpiysnnfgkffeitpeknpqlrdldiflssvdi
negalllphfnskaivilvinegdanielvgikelevqryraelseddvfvipaaypfvv
natsnlnflafginaennqrnflagekdnvvrqierqvqelafpgsaqdverllkkqres
yfvda

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ipkC (C:)
lkvredennpfyfrssnsfqtlfenqngrirllqrfnkrspqlenlrdyrivqfqskpnt
illphhadadfllfvlsgrailtlvnnddrdsynlhpgdaqripagttyylvnphdhqnl
kiiklaipvnkpgryddfflsstqaqqsylqgfshniletsfhsefeeinrvlfgeeeeq
rqqegvivelskeqirqlsrraksssrktissedepfnlrsrnpiysnnfgkffeitpek
npqlrdldiflssvdinegalllphfnskaivilvinegdanielvgikeqqqkqkqeee
plevqryraelseddvfvipaaypfvvnatsnlnflafginaennqrnflagekdnvvrq
ierqvqelafpgsaqdverllkkqresyfvdaqpqqkeegskgrkgpfpsilgaly

    Sequence, based on observed residues (ATOM records): (download) 
    >1ipkC (C:)
vredennpfyfrssnsfqtlfenqngrirllqrfnkrspqlenlrdyrivqfqskpntil
lphhadadfllfvlsgrailtlvnnddrdsynlhpgdaqripagttyylvnphdhqnlki
iklaipvnkpgryddfflsstqaqqsylqgfshniletsfhsefeeinrvlfgeeeeqrq
qegvivelskeqirqlsrraksssrktissedepfnlrsrnpiysnnfgkffeitpeknp
qlrdldiflssvdinegalllphfnskaivilvinegdanielvgikplevqryraelse
ddvfvipaaypfvvnatsnlnflafginaennqrnflagekdnvvrqierqvqelafpgs
aqdverllkkqresyfvda