PDB entry 1gzq

View 1gzq on RCSB PDB site
Description: cd1b in complex with phophatidylinositol
Class: glycoprotein
Keywords: phophatidylinositol, MHC, glycoprotein, antigen presentation
Deposited on 2002-05-24, released 2002-07-31
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.26 Å
R-factor: 0.203
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein cd1b
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GZQ
    • Uniprot P29016 (Start-279)
    Domains in SCOPe 2.02: d1gzqa1, d1gzqa2
  • Chain 'B':
    Compound: b2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1gzqb_
  • Heterogens: PII, NO3, D12, TWT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1gzqA (A:)
    mgsehafqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgn
    fsdkevaeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrga
    lggldflsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnag
    kadlqrqvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilp
    nanwtwylratldvadgeaaglscrvkhsslegqdiilywgpgsggglndifeaqkiewh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1gzqA (A:)
    afqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgnfsdke
    vaeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrgalggld
    flsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnagkadlq
    rqvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanwt
    wylratldvadgeaaglscrvkhsslegqdiilywgpg
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1gzqB (B:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm