PDB entry 1gzp

View 1gzp on RCSB PDB site
Description: cd1b in complex with gm2 ganglioside
Class: glycoprotein
Keywords: lipid, ganglioside, MHC, antigen presentation, glycoprotein
Deposited on 2002-05-24, released 2002-07-31
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.225
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein cd1b
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GZP
    • Uniprot P29016 (Start-279)
    Domains in SCOPe 2.06: d1gzpa1, d1gzpa2, d1gzpa3
  • Chain 'B':
    Compound: b2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1gzpb2, d1gzpb3
  • Heterogens: GM2, D12, TWT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1gzpA (A:)
    mgsehafqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgn
    fsdkevaeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrga
    lggldflsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnag
    kadlqrqvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilp
    nanwtwylratldvadgeaaglscrvkhsslegqdiilywgpgsggglndifeaqkiewh
    

    Sequence, based on observed residues (ATOM records): (download)
    >1gzpA (A:)
    fqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgnfsdkev
    aeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrgalggldf
    lsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnagkadlqr
    qvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanwtw
    ylratldvadgeaaglscrvkhsslegqdiilywgpg
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1gzpB (B:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm