PDB entry 1gzp
View 1gzp on RCSB PDB site
Description: cd1b in complex with gm2 ganglioside
Class: glycoprotein
Keywords: lipid, ganglioside, MHC, antigen presentation, glycoprotein
Deposited on
2002-05-24, released
2002-07-31
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.225
AEROSPACI score: 0.25
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell surface glycoprotein cd1b
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 1GZP
- Uniprot P29016 (Start-279)
Domains in SCOPe 2.01: d1gzpa1, d1gzpa2 - Chain 'B':
Compound: b2-microglobulin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1gzpb_ - Heterogens: GM2, D12, TWT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1gzpA (A:)
mgsehafqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgn
fsdkevaeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrga
lggldflsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnag
kadlqrqvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilp
nanwtwylratldvadgeaaglscrvkhsslegqdiilywgpgsggglndifeaqkiewh
Sequence, based on observed residues (ATOM records): (download)
>1gzpA (A:)
fqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgnfsdkev
aeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrgalggldf
lsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnagkadlqr
qvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanwtw
ylratldvadgeaaglscrvkhsslegqdiilywgpg
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1gzpB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm