PDB entry 1gyl

View 1gyl on RCSB PDB site
Description: involvement of tyr24 and trp108 in substrate binding and substrate specificity of glycolate oxidase
Class: oxidoreductase (flavoenzyme)
Keywords: oxidoreductase (flavoenzyme)
Deposited on 1995-01-30, released 1995-03-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.254
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycolate oxidase
    Species: Spinacia oleracea [TaxId:3562]
    Gene: GLYCOLATE OXIDASE FROM SPINACH
    Database cross-references and differences (RAF-indexed):
    • Uniprot P05414 (0-End)
      • conflict (23)
    Domains in SCOPe 2.08: d1gyla_
  • Chain 'B':
    Compound: glycolate oxidase
    Species: Spinacia oleracea [TaxId:3562]
    Gene: GLYCOLATE OXIDASE FROM SPINACH
    Database cross-references and differences (RAF-indexed):
    • Uniprot P05414 (0-End)
      • conflict (23)
    Domains in SCOPe 2.08: d1gylb_
  • Heterogens: FMN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1gylA (A:)
meitnvneyeaiakqklpkmvydfyasgaedqwtlaenrnafsrilfrprilidvtnidm
tttilgfkismpimiaptamqkmahpegeyataraasaagtimtlsswatssveevastg
pgirffqlyvykdrnvvaqlvrraeragfkaialtvdtprlgrreadiknrfvlppfltl
knfegidlgkmdkandsglssyvagqidrslswkdvawlqtitslpilvkgvitaedarl
avqhgaagiivsnhgarqldyvpatimaleevvkaaqgripvfldggvrrgtdvfkalal
gaagvfigrpvvfslaaegeagvkkvlqmmrdefeltmalsgcrslkeisrshiaadwdg
pssravarl

    Sequence, based on observed residues (ATOM records): (download) 
    >1gylA (A:)
meitnvneyeaiakqklpkmvydfyasgaedqwtlaenrnafsrilfrprilidvtnidm
tttilgfkismpimiaptamqkmahpegeyataraasaagtimtlsswatssveevastg
pgirffqlyvykdrnvvaqlvrraeragfkaialtvdtprlgrreadiknrfvlppfltl
knfegidlgkglssyvagqidrslswkdvawlqtitslpilvkgvitaedarlavqhgaa
giivsnhgarqldyvpatimaleevvkaaqgripvfldggvrrgtdvfkalalgaagvfi
grpvvfslaaegeagvkkvlqmmrdefeltmalsgcrslkeisrshiaadwd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1gylB (B:)
meitnvneyeaiakqklpkmvydfyasgaedqwtlaenrnafsrilfrprilidvtnidm
tttilgfkismpimiaptamqkmahpegeyataraasaagtimtlsswatssveevastg
pgirffqlyvykdrnvvaqlvrraeragfkaialtvdtprlgrreadiknrfvlppfltl
knfegidlgkmdkandsglssyvagqidrslswkdvawlqtitslpilvkgvitaedarl
avqhgaagiivsnhgarqldyvpatimaleevvkaaqgripvfldggvrrgtdvfkalal
gaagvfigrpvvfslaaegeagvkkvlqmmrdefeltmalsgcrslkeisrshiaadwdg
pssravarl

    Sequence, based on observed residues (ATOM records): (download) 
    >1gylB (B:)
meitnvneyeaiakqklpkmvydfyasgaedqwtlaenrnafsrilfrprilidvtnidm
tttilgfkismpimiaptamqkmahpegeyataraasaagtimtlsswatssveevastg
pgirffqlyvykdrnvvaqlvrraeragfkaialtvdtprlgrreadiknrfvlppfltl
knfegidlglssyvagqidrslswkdvawlqtitslpilvkgvitaedarlavqhgaagi
ivsnhgarqldyvpatimaleevvkaaqgripvfldggvrrgtdvfkalalgaagvfigr
pvvfslaaegeagvkkvlqmmrdefeltmalsgcrslkeisrshiaadwd