PDB entry 1gki

View 1gki on RCSB PDB site
Description: plasmid coupling protein trwb in complex with ADP and mg2+.
Class: coupling protein
Keywords: coupling protein, bacterial conjugation, f1-ATPase-like quaternary structure, ring helicases
Deposited on 2001-08-14, released 2002-05-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.21
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: conjugal transfer protein trwb
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1gkia_
  • Chain 'B':
    Compound: conjugal transfer protein trwb
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1gkib_
  • Chain 'D':
    Compound: conjugal transfer protein trwb
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1gkid_
  • Chain 'E':
    Compound: conjugal transfer protein trwb
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1gkie_
  • Chain 'F':
    Compound: conjugal transfer protein trwb
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1gkif_
  • Chain 'G':
    Compound: conjugal transfer protein trwb
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1gkig_
  • Heterogens: ADP, MG, EPE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1gkiA (A:)
lnsvgqgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvng
atgtgksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffne
irndydwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiat
fddlrgflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpng
gnlfitwredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklaslada
ltkgrkaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslsl
geheverdryskntgkhhstgralervrervvmpaeianlpdltayvgfagnrpiakvpl
eikqfanrqpafvegti

    Sequence, based on observed residues (ATOM records): (download) 
    >1gkiA (A:)
gefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvngatgtgk
svllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffneirndyd
wqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiatfddlrg
flegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpnggnlfit
wredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklasladaltkgrk
aglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslslgeheve
rdalervrervvmpaeianlpdltayvgfagnrpiakvpleikqfanrqpafvegt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1gkiB (B:)
lnsvgqgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvng
atgtgksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffne
irndydwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiat
fddlrgflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpng
gnlfitwredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklaslada
ltkgrkaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslsl
geheverdryskntgkhhstgralervrervvmpaeianlpdltayvgfagnrpiakvpl
eikqfanrqpafvegti

    Sequence, based on observed residues (ATOM records): (download) 
    >1gkiB (B:)
svgqgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvngat
gtgksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffneir
ndydwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiatfd
dlrgflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpnggn
lfitwredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklasladalt
kgrkaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslslge
heverdrervrervvmpaeianlpdltayvgfagnrpiakvpleikqfanrqpafve

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1gkiD (D:)
lnsvgqgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvng
atgtgksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffne
irndydwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiat
fddlrgflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpng
gnlfitwredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklaslada
ltkgrkaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslsl
geheverdryskntgkhhstgralervrervvmpaeianlpdltayvgfagnrpiakvpl
eikqfanrqpafvegti

    Sequence, based on observed residues (ATOM records): (download) 
    >1gkiD (D:)
qgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvngatgtg
ksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffneirndy
dwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiatfddlr
gflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpnggnlfi
twredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklasladaltkgr
kaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslslgehev
erdrlervrervvmpaeianlpdltayvgfagnrpiakvpleikqfanrqpafveg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1gkiE (E:)
lnsvgqgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvng
atgtgksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffne
irndydwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiat
fddlrgflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpng
gnlfitwredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklaslada
ltkgrkaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslsl
geheverdryskntgkhhstgralervrervvmpaeianlpdltayvgfagnrpiakvpl
eikqfanrqpafvegti

    Sequence, based on observed residues (ATOM records): (download) 
    >1gkiE (E:)
qgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvngatgtg
ksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffneirndy
dwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiatfddlr
gflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpnggnlfi
twredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklasladaltkgr
kaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslslgehev
erdlervrervvmpaeianlpdltayvgfagnrpiakvpleikqfanrqpafve

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1gkiF (F:)
lnsvgqgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvng
atgtgksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffne
irndydwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiat
fddlrgflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpng
gnlfitwredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklaslada
ltkgrkaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslsl
geheverdryskntgkhhstgralervrervvmpaeianlpdltayvgfagnrpiakvpl
eikqfanrqpafvegti

    Sequence, based on observed residues (ATOM records): (download) 
    >1gkiF (F:)
gefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvngatgtgk
svllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffneirndyd
wqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiatfddlrg
flegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpnggnlfit
wredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklasladaltkgrk
aglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslslgeheve
rdervrervvmpaeianlpdltayvgfagnrpiakvpleikqfanrqpafve

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1gkiG (G:)
lnsvgqgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvng
atgtgksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffne
irndydwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiat
fddlrgflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpng
gnlfitwredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklaslada
ltkgrkaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslsl
geheverdryskntgkhhstgralervrervvmpaeianlpdltayvgfagnrpiakvpl
eikqfanrqpafvegti

    Sequence, based on observed residues (ATOM records): (download) 
    >1gkiG (G:)
gefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvngatgtgk
svllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffneirndyd
wqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiatfddlrg
flegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpnggnlfit
wredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklasladaltkgrk
aglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslslgeheve
rdervrervvmpaeianlpdltayvgfagnrpiakvpleikqfanrqpafveg