PDB entry 1giy

View 1giy on RCSB PDB site
Description: crystal structure of the ribosome at 5.5 a resolution. this file, 1giy, contains the 50s ribosome subunit. the 30s ribosome subunit, three tRNA, and mRNA molecules are in the file 1gix
Class: ribosome
Keywords: ribosome assembly, protein synthesis, life, RIBOSOME
Deposited on 2001-03-30, released 2001-05-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 5.5 Å
R-factor: N/A
AEROSPACI score: -0 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 50s 23s ribosomal RNA
    Species: Thermus thermophilus [TaxId:274]
  • Chain 'B':
    Compound: 50s 5s ribosomal RNA
    Species: Thermus thermophilus [TaxId:274]
  • Chain 'C':
    Compound: 50s ribosomal protein l1
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyc_
  • Chain 'D':
    Compound: 50S ribosomal protein L2
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyd_
  • Chain 'E':
    Compound: 50S ribosomal protein L3
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giye_
  • Chain 'F':
    Compound: 50S ribosomal protein L4
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12735 (0-245)
      • conflict (1)
    Domains in SCOPe 2.08: d1giyf_
  • Chain 'G':
    Compound: 50S ribosomal protein L5
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyg_
  • Chain 'H':
    Compound: 50S ribosomal protein L6
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyh_
  • Chain 'I':
    Compound: 50S ribosomal protein L7/L12
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyi_
  • Chain 'J':
    Compound: 50S ribosomal protein L7/L12
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyj_
  • Chain 'K':
    Compound: 50S ribosomal protein L9
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyk_
  • Chain 'L':
    Compound: 50S ribosomal protein L11
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyl_
  • Chain 'M':
    Compound: 50S ribosomal protein L13
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giym_
  • Chain 'N':
    Compound: 50S ribosomal protein L14
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyn_
  • Chain 'O':
    Compound: 50S ribosomal protein L15
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyo_
  • Chain 'P':
    Compound: 50S ribosomal protein L16
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GIY (0-137)
    Domains in SCOPe 2.08: d1giyp_
  • Chain 'Q':
    Compound: 50S ribosomal protein L18
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyq_
  • Chain 'R':
    Compound: 50S ribosomal protein L19
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyr_
  • Chain 'S':
    Compound: 50S ribosomal protein L22
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giys_
  • Chain 'T':
    Compound: 50S ribosomal protein L23
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyt_
  • Chain 'U':
    Compound: 50S ribosomal protein L24
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyu_
  • Chain 'V':
    Compound: 50S ribosomal protein L25
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyv_
  • Chain 'W':
    Compound: 50S ribosomal protein L29
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyw_
  • Chain 'X':
    Compound: 50S ribosomal protein L30
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1giyx_

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1giyC (C:)
pkhgkryrallekvdpnkiytideaahlvkelatakfdetvevhaklgidprrsdqnvrg
tvslphglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdvm
gavgsklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkasf
ppekladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyC (C:)
kryrallekvdpnkiytideaahlvkelatakfdetvevhaklgidprrsdqnvrgtvsl
phglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdvmgavg
sklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkasfppek
ladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1giyD (D:)
qyriidfkrdkdgipgrvatieydpnrsanialinyadgekryiiapknlkvgmeimsgp
dadikignalplenipvgtlvhnielkpgrggqlvraagtsaqvlgkegkyvivrlasge
vrmilgkcratvgevgnggrtdkpfvkagnkhhkmkargtkwpnvrgvamnavdhpfg

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyD (D:)
qyriidfkrdkdgipgrvatieydpnrsanialinyadgekryiiapknlkvgmeimsgp
dadikignalplenipvgtlvhnielkpgrggqlvraagtsaqvlgkegkyvivrlasge
vrmilgkcratvgevgnggrtdkpfvkagnkhhkmkapnvrgvamnavdhpfg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1giyE (E:)
pqpsrprkgslgfgprkrstsetprfnswpsddgqpgvqgfagykagmthvvlvndepns
pregmeetvpvtvietppmravalrayedtpygqrpltevwtdefhseldrtlsdrldha
ldivedqirdaheagdlgdlrlithtvpdavpsvpkkkpdvmetrvgggsvsdrldhald
ivedggehamndifrageyadvagvtkgkgtqgpvkrwgvqkrkgkharqgwrrrignlg
pwnpsrvrstvpqqgqtgyhqrtelnkrlidigegdeptvdggfvnygevdgpytlvkgs
vpgpdkrlvpffrpavrpndqprldpevryvsnesnqg

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyE (E:)
vqgfagykagmtpregmetvpvtvietppmravalrayeqrpltevwtdefhseldrtls
drldhaldivedggehamnifrageyadvagvtkgkgtqgpvkrwgvqkrkgkharqgwr
rrignlgpwnpsrvrstvpqqgqtgyhqrtelnkrlidigeggpytlvkgsvpgpdkrlv
pffravrpndq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1giyF (F:)
meatiydldgntdgevdlpdvfetpvrsdligkavraaqanrkqdygsdeyaglrtpaes
fgsgrgqahvpkldgrarrvpqavkgrsahppktekdrsldlndkerqlavrsalaatad
adlvadrghefdrdevpvvvsddfedlvktqevvsllealdvhadidradetkikagqgs
argrkyrrpasilfvtsdepstaarnlagadvatasevntedlapggapgrltvftesal
aevaer

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyF (F:)
meatiydntdgevdlpdvfetpvrsdligkavraaqanrkqdygsdeyaglrtpaesfgs
grgqahrvpqavkgrsahppktekdrsldlndkerqlavrsalaatadvvvsddfedlvk
tqevvsllealdvhadidrlfvtsdepstaarnlagadvatasevntedlapgrltvfte
salaevaer

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1giyG (G:)
ssesesggdfhemrepriekvvvhmgighggrdlanaedilgeitgqmpvrtkakrtvge
fdiregdpigakvtlrdemaeeflqtalplaelatsqfddtgnfsfgveehtefpsqeyd
psigiygldvtvnlvrpgyrvakrdkasrsiptkhrlnpadavafiestydvevse

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyG (G:)
fhemrepriekvvvhmgighanaedilgeitgqmpvrtkakrtvgefdiregdpigakvt
lrdemaeeflqtalplaelatsqfddtgnfsfgldvtvnlvrpgyrvakrdkasrsiptk
hr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1giyH (H:)
srvgkkpieipagvtvtvngntvtvkgpkgeltrtfhpdmtitvegnvitvtrpsdekhh
ralhgttrsllanmvegvskgyekalelvgvgyraskqgkklvlsvgyshpveiepeegl
eievpsqtkiivkgadkqrvgelaaniravrppepykgkgiryegelvrlkegktgk

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyH (H:)
pieipagvtvtvngntvtvkgpkgeltrtfhpdmtitvegnvitvtrpsdekhhralhgt
trsllanmvegvskgyekalelvgvgyraskqgkklvlsvgyshpveiepeegleievps
qtkiivkgadkqrvgelaaniravrppepykgkgiryegelvrl

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1giyI (I:)
mtideiieaiekltvselaelvkkledkfgvtaaapvavaaapvagaaagaaqeektefd
vvlksfgqnkiqvikvvreitglglkeakdlvekagspdaviksgvskeeaeeikkklee
agaevelk

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1giyJ (J:)
mtideiieaiekltvselaelvkkledkfgvtaaapvavaaapvagaaagaaqeektefd
vvlksfgqnkiqvikvvreitglglkeakdlvekagspdaviksgvskeeaeeikkklee
agaevelk

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1giyK (K:)
mkviflkdvkgkgkkgeiknvadgyannflfkqglaieatpanlkaleaqkqkeqrqaae
elanakklkeqlekltvtipakageggrlfgsitskqiaeslqaqhglkldkrkielada
iralgytnvpvklhpevtatlkvhvteqk

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyK (K:)
mkviflkdvkgkgkkgeiknvadgyannflfkqglaieatpanlkaleaqkqkeqrqaae
elanakklkeqlekltvtipakagegrlfgsitskqiaeslqaqhglkldkrkieladai
ralgytnvpvklhpevtatlkvhvteqk

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1giyL (L:)
makkvaaqiklqlpagkatpappvgpalgqhgvnimefckrfnaetadkagmilpvvitv
yedksftfiiktppasfllkkaagiekgssepkrkivgkvtrkqieeiaktkmpdlnans
leaamkiiegtaksmgievvd

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyL (L:)
qiklqlpagkatpappvgpalgqhgvnimefckrfnaetadkagmilpvvitvyedksft
fiiktppasfllkkaagiekgssepkrkivgkvtrkqieeiaktkmpdlnansleaamki
iegtaksmgievv

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1giyM (M:)
msvaefdadvivdardcimgrvasqvaeqaldgetvavvnaeravitgreeqivekyekr
vdigndngyfypkrpdgifkrtirgmlphkkqrgreafesvrvylgnpydedgevldgts
ldrlsnikfvtlgeisetlganktw

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyM (M:)
aefdadvivdardcimgrvasqvaeqaldgetvavvnaeravitgreeqivekyekrvdi
gndngyfypkrpdgifkrtirgmlpkkqrgreafesvrvylgnpydtlgeisetlga

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1giyN (N:)
miqqesrlkvadnsgarevlvikvlggsgrryanigdvvvatvkdatpggvvkkgqvvka
vvvrtkrgvrrpdgsyirfdenacviirddksprgtrifgpvarelrdkdfmkiislape
vi

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >1giyO (O:)
tskkkrqrgsrthgggshknrrgaghrggrgdagrdkhefhnheplgksgfkrpqkvqee
aatidvreidenvtllaaddvaevedggfrvdvrdvveeaddadyvkvlgagqvrheltl
iaddfsegarekvegaggsveltdlgeerqaeaeetedadadee

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyO (O:)
fkrpqkvqeeaatidvreidenvtllaaddvaedvrdvaddadyvkvlgagqvrheltli
addfsegarekvegaggsveltdl

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1giyP (P:)
sikptrreyisgipgkgiaqfkmgnntypaqvenvvekpvqirhnaleaarnaanrfvqn
sgkfrirkfpfhvireqdgdgmrapfgksvgtaarshganhdfiawvnpdpavefawrra
ymkvtptvnidsspagna

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >1giyQ (Q:)
atgprykvpmrrrreartdyhqrlrllksgkprlvarksnkhvraqlvtlgpngddtlas
ahssdlaeygweaptgnmpsayltgllaglraqeagveeavldiglnsptpgskvfaiqe
gaidagldiphnddvladwqrtrgahiaeydeqleeplysgdfdaadlpehfdelretll
dgdiel

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyQ (Q:)
pmrrrreartdyhqrlrllksgkprlvarksnkhvraqlvtpngddtlasahssdlaeyg
weptgsayltgllaglraqeagveeavldiglnsptpkvfaiqegaidagldi

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >1giyR (R:)
prtrecdycgtdiepgtgtmfvhkdgatthfcsskcennadlgrearnlewtdtargeag
eaedea

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyR (R:)
recdycgtdiepgtgtmfvhkdgatthfcsskcennadlrearnlewtdtar

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >1giyS (S:)
meakaiaryvrisprkvrlvvdlirgksleearnilrytnkrgayfvakvlesaaanavn
nhdmledrlyvkaayvdegpalkrvlprargradiikkrtshitvilgekhgk

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyS (S:)
meakaiaryvrisprkvrlvvdlirgksleearnilrytnkrgayfvakvlesaaanavn
nhdmledrlyvkaayvdegpalkrvlprargradiikkrtshitvilgek

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >1giyT (T:)
swdvikhphvtekamndmdfqnklqfavddraskgevadaveeqydvtveqvntqntmdg
ekkavvrlsedddaqevasrigvf

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyT (T:)
swdvikhphvtekamndmdfnklqfavddraskgevadaveeqydvtveqvntqntmdge
kkavvrlsedddqeva

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >1giyU (U:)
skqpdkqrksqrraplherhkqvratlsadlreeygqrnvrvnagdtvevlrgdfageeg
evinvdldkavihvedvtlektdgeevprpldtsnvrvtdldledekrearleseddsa

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyU (U:)
skqpdkqrksqrraplherhkqvratlsadlreeygvrvnagdtvevlrgdfageegevi
nvdldkavihvedvtlektdgeevprpldtsnvrvtdldledekrearle

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >1giyV (V:)
mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
ltivvdgkeikvkaqdvqrhpykpklqhidfvra

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyV (V:)
mftinaevrqgkgasrlraankfpaiiygkeaplaieldhdkvmnmqakaefysevltiv
vdgkeikvkaqdvqrhykpklqhidfvra

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >1giyW (W:)
tvlhvqeirdmtpaereaelddlktellnaravqaaggapenpgrikelrkaiariktiq
geegdlqene

    Sequence, based on observed residues (ATOM records): (download) 
    >1giyW (W:)
tvlhvqeirdmtpaereaelddlktellnarvqaaggapenpgrikelrkaiariktiqg
eegd

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1giyX (X:)
mprlkvklvkspigypkdqkaalkalglrrlqqervledtpairgnvekvahlvrvevve