PDB entry 1gh6

View 1gh6 on RCSB PDB site
Description: retinoblastoma pocket complexed with sv40 large t antigen
Class: antitumor protein
Keywords: tumor suppressor, oncoprotein, antitumor protein
Deposited on 2000-11-15, released 2001-11-15
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.248
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03070 (3-113)
      • see remark 999 (0-2)
    Domains in SCOPe 2.06: d1gh6a_
  • Chain 'B':
    Compound: Retinoblastoma-associated protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06400 (205-332)
      • see remark 999 (199-204)
    Domains in SCOPe 2.06: d1gh6b1, d1gh6b2

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1gh6A (A:)
    shmreeslqlmdllglersawgniplmrkaylkkckefhpdkggdeekmkkmntlykkme
    dgvkyahqpdfggfwdateiptygtdeweqwwnafneenlfcseempssddeat
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1gh6B (B:)
    mntiqqlmmilnsasdqpsenlisyfnnctvnpkesilkrvkdigyifkekfakavgagc
    vaigsqryklgvrlyyrvmesmlkseeerlsiqnfskllndnifhmsllacalevvmaty
    srstsqnldsgtdlsfpwilnvlnlkafdfykviesfikaegnltremikhlercehrim
    eslawlsdsplfdlikqsklvprgstslslfykkvyrlaylrlntlcerllsehpelehi
    iwtlfqhtlqneyelmrdrhldqimmcsmygickvknidlkfkiivtaykdlphavqetf
    krvlikeeeydsiivfynsvfmqrlktnilqya
    

    Sequence, based on observed residues (ATOM records): (download)
    >1gh6B (B:)
    mntiqqlmmilnsasdqpsenlisyfnnctvnpkesilkrvkdigyifkekfakavgagc
    vaigsqryklgvrlyyrvmesmlkseeerlsiqnfskllndnifhmsllacalevvmaty
    srsttdlsfpwilnvlnlkafdfykviesfikaegnltremikhlercehrimeslawls
    dsplfdlikqsklvprgstslslfykkvyrlaylrlntlcerllsehpelehiiwtlfqh
    tlqneyelmrdrhldqimmcsmygickvknidlkfkiivtaykdlphavqetfkrvlike
    eeydsiivfynsvfmqrlktnilqya