PDB entry 1ggy

View 1ggy on RCSB PDB site
Description: human factor xiii with ytterbium bound in the ion site
Class: transferase
Keywords: transglutaminase, blood coagulation, ytterbium, transferase
Deposited on 1998-07-23, released 1999-02-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (coagulation factor xiii)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00488
      • conflict (650)
    Domains in SCOPe 2.08: d1ggya1, d1ggya2, d1ggya3, d1ggya4
  • Chain 'B':
    Compound: protein (coagulation factor xiii)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00488
      • conflict (650)
    Domains in SCOPe 2.08: d1ggyb1, d1ggyb2, d1ggyb3, d1ggyb4
  • Heterogens: YB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ggyA (A:)
setsrtafggrravppnnsnaaeddlptvelqgvvprgvnlqeflnvtsvhlfkerwdtn
kvdhhtdkyennklivrrgqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvp
ivselqsgkwgakivmredrsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdt
yilfnpwceddavyldnekereeyvlndigvifygevndiktrswsygqfedgildtcly
vmdraqmdlsgrgnpikvsrvgsamvnakddegvlvgswdniyaygvppsawtgsvdill
eyrssenpvrygqcwvfagvfntflrclgiparivtnyfsahdndanlqmdifleedgnv
nskltkdsvwnyhcwneawmtrpdlpvgfggwqavdstpqensdgmyrcgpasvqaikhg
hvcfqfdapfvfaevnsdliyitakkdgthvvenvdathigklivtkqiggdgmmditdt
ykfqegqeeerlaletalmygakkplntegvmksrsnvdmdfevenavlgkdfklsitfr
nnshnrytitaylsanitfytgvpkaefkketfdvtleplsfkkeavliqageymgqlle
qaslhffvtarinetrdvlakqkstvltipeiiikvrgtqvvgsdmtvtveftnplketl
rnvwvhldgpgvtrpmkkmfreirpnstvqweevcrpwvsghrkliasmssdslrhvyge
ldvqiqrrpsm

    Sequence, based on observed residues (ATOM records): (download) 
    >1ggyA (A:)
fggrravppnnsnaaeddlptveleflnvtsvhlfkerwdtnkvdhhtdkyennklivrr
gqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvpivselqsgkwgakivmre
drsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdtyilfnpwceddavyldne
kereeyvlndigvifygevndiktrswsygqfedgildtclyvmdraqmdlsgrgnpikv
srvgsamvnakddegvlvgswdniyaygvppsawtgsvdilleyrssenpvrygqcwvfa
gvfntflrclgiparivtnyfsahdndanlqmdifleedgnvnskltkdsvwnyhcwnea
wmtrpdlpvgfggwqavdstpqensdgmyrcgpasvqaikhghvcfqfdapfvfaevnsd
liyitakkdgthvvenvdathigklivtkqiggdgmmditdtykfqegqeeerlaletal
mygakkplntsnvdmdfevenavlgkdfklsitfrnnshnrytitaylsanitfytgvpk
aefkketfdvtleplsfkkeavliqageymgqlleqaslhffvtarinetrdvlakqkst
vltipeiiikvrgtqvvgsdmtvtveftnplketlrnvwvhldgpgvtrpmkkmfreirp
nstvqweevcrpwvsghrkliasmssdslrhvygeldvqiqr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ggyB (B:)
setsrtafggrravppnnsnaaeddlptvelqgvvprgvnlqeflnvtsvhlfkerwdtn
kvdhhtdkyennklivrrgqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvp
ivselqsgkwgakivmredrsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdt
yilfnpwceddavyldnekereeyvlndigvifygevndiktrswsygqfedgildtcly
vmdraqmdlsgrgnpikvsrvgsamvnakddegvlvgswdniyaygvppsawtgsvdill
eyrssenpvrygqcwvfagvfntflrclgiparivtnyfsahdndanlqmdifleedgnv
nskltkdsvwnyhcwneawmtrpdlpvgfggwqavdstpqensdgmyrcgpasvqaikhg
hvcfqfdapfvfaevnsdliyitakkdgthvvenvdathigklivtkqiggdgmmditdt
ykfqegqeeerlaletalmygakkplntegvmksrsnvdmdfevenavlgkdfklsitfr
nnshnrytitaylsanitfytgvpkaefkketfdvtleplsfkkeavliqageymgqlle
qaslhffvtarinetrdvlakqkstvltipeiiikvrgtqvvgsdmtvtveftnplketl
rnvwvhldgpgvtrpmkkmfreirpnstvqweevcrpwvsghrkliasmssdslrhvyge
ldvqiqrrpsm

    Sequence, based on observed residues (ATOM records): (download) 
    >1ggyB (B:)
fggrravppnnsnaaeddlptvelqgqeflnvtsvhlfkerwdtnkvdhhtdkyennkli
vrrgqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvpivselqsgkwgakiv
mredrsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdtyilfnpwceddavyl
dnekereeyvlndigvifygevndiktrswsygqfedgildtclyvmdraqmdlsgrgnp
ikvsrvgsamvnakddegvlvgswdniyaygvppsawtgsvdilleyrssenpvrygqcw
vfagvfntflrclgiparivtnyfsahdndanlqmdifleedgnvnskltkdsvwnyhcw
neawmtrpdlpvgfggwqavdstpqensdgmyrcgpasvqaikhghvcfqfdapfvfaev
nsdliyitakkdgthvvenvdathigklivtkqiggdgmmditdtykfqegqeeerlale
talmygakkplntsnvdmdfevenavlgkdfklsitfrnnshnrytitaylsanitfytg
vpkaefkketfdvtleplsfkkeavliqageymgqlleqaslhffvtarinetrdvlakq
kstvltipeiiikvrgtqvvgsdmtvtveftnplketlrnvwvhldgpgvtrpmkkmfre
irpnstvqweevcrpwvsghrkliasmssdslrhvygeldvqiqr