PDB entry 1gc1
View 1gc1 on RCSB PDB site
Description: hiv-1 gp120 core complexed with cd4 and a neutralizing human antibody
Class: Viral protein/receptor/Immune system
Keywords: complex (hiv envelope protein/cd4/fab), hiv-1 exterior envelope gp120, T-cell surface glycoprotein cd4, antigen-binding fragment of human immunoglobulin 17b, glycosylated protein
Deposited on
1998-06-15, released
1998-07-08
The last revision prior to the SCOP 1.73 freeze date was dated
1998-08-19, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.2103
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'C':
Compound: cd4
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1gc1c1, d1gc1c2 - Chain 'G':
Compound: envelope protein gp120
Species: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
Database cross-references and differences (RAF-indexed):
- Uniprot P04578 (238-320)
- conflict (15)
- conflict (174)
- conflict (298)
- PDB 1GC1 (Start-86)
Domains in SCOP 1.73: d1gc1g_ - Chain 'H':
Compound: antibody 17b
Species: HOMO SAPIENS
Domains in SCOP 1.73: d1gc1h1, d1gc1h2 - Chain 'L':
Compound: antibody 17b
Species: HOMO SAPIENS
Domains in SCOP 1.73: d1gc1l1, d1gc1l2 - Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1gc1C (C:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlafq
kasnt
Sequence, based on observed residues (ATOM records): (download)
>1gc1C (C:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlafq
k
- Chain 'G':
Sequence, based on SEQRES records: (download)
>1gc1G (G:)
garsevvlvnvtenfnmwkndmveqmhediislwdqslkpcvkltplcvgagscntsvit
qacpkvsfepipihycapagfailkcnnktfngtgpctnvstvqcthgirpvvstqllln
gslaeeevvirsvnftdnaktiivqlntsveinctgaghcnisrakwnntlkqiasklre
qfgnnktiifkqssggdpeivthsfncggeffycnstqlfnstwfnstwstkgsnntegs
dtitlpcrikqiinmwqkvgkamyappisgqircssnitgllltrdggnsnneseifrpg
ggdmrdnwrselykykvvkie
Sequence, based on observed residues (ATOM records): (download)
>1gc1G (G:)
tenfnmwkndmveqmhediislwdqslkpcvkltplcvgagscntsvitqacpkvsfepi
pihycapagfailkcnnktfngtgpctnvstvqcthgirpvvstqlllngslaeeevvir
svnftdnaktiivqlntsveinctgaghcnisrakwnntlkqiasklreqfgnnktiifk
qssggdpeivthsfncggeffycnstqlfnstwfgsdtitlpcrikqiinmwqkvgkamy
appisgqircssnitgllltrdggnsnneseifrpgggdmrdnwrselykykvvkie
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1gc1H (H:)
qvqllesgaevkkpgssvkvsckasgdtfirysftwvrqapgqglewmgriitildvahy
aphlqgrvtitadkststvylelrnlrsddtavyfcagvyegeadegeydnngflkhwgq
gtlvtvtsastkgpsvfplapsskstsggtaalgclvkdyfpqpvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1gc1L (L:)
eleltqspatlsvspgeratlscrasesvssdlawyqqkpgqaprlliygastratgvpa
rfsgsgsgaeftltisslqsedfavyycqqynnwpprytfgqgtrleikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnr