PDB entry 1g9m
View 1g9m on RCSB PDB site
Description: hiv-1 hxbc2 gp120 envelope glycoprotein complexed with cd4 and induced neutralizing antibody 17b
Class: Viral protein/Immune system
Keywords: complex (hiv envelope protein/cd4/fab), hiv-1 exterior envelope gp120 from laboratory-adapted isolate, hxbc2, surface T-cell glycoprotein cd4, antigen-binding fragment of human immunoglobulin 17b
Deposited on
2000-11-24, released
2000-12-27
The last revision prior to the SCOP 1.75 freeze date was dated
2000-12-27, with a file datestamp of
2007-06-14.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.268
AEROSPACI score: 0.33
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'C':
Compound: T-cell surface glycoprotein cd4
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1g9mc1, d1g9mc2 - Chain 'G':
Compound: envelope glycoprotein gp120
Species: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
Database cross-references and differences (RAF-indexed):
- Uniprot P04578 (4-48)
- see remark 999 (49-51)
- see remark 999 (155-157)
- Uniprot P04578 (52-154)
- Uniprot P04578 (158-320)
Domains in SCOP 1.75: d1g9mg_ - Chain 'H':
Compound: antibody 17b, heavy chain
Species: HOMO SAPIENS
Domains in SCOP 1.75: d1g9mh1, d1g9mh2 - Chain 'L':
Compound: antibody 17b, light chain
Species: HOMO SAPIENS
Domains in SCOP 1.75: d1g9ml1, d1g9ml2 - Heterogens: NDG, NAG, IPA, HOH
PDB Chain Sequences:
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1g9mC (C:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlafq
kasnt
Sequence, based on observed residues (ATOM records): (download)
>1g9mC (C:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlafq
k
- Chain 'G':
Sequence, based on SEQRES records: (download)
>1g9mG (G:)
garsevvlvnvtenfnmwkndmveqmhediislwdqslkpcvkltplcvgagscntsvit
qacpkvsfepipihycapagfailkcnnktfngtgpctnvstvqcthgirpvvstqllln
gslaeeevvirsvnftdnaktiivqlntsveinctgaghcnisrakwnntlkqiasklre
qfgnnktiifkqssggdpeivthsfncggeffycnstqlfnstwfnstwstegsnntegs
dtitlpcrikqiinmwqkvgkamyappisgqircssnitgllltrdggnsnneseifrpg
ggdmrdnwrselykykvvkie
Sequence, based on observed residues (ATOM records): (download)
>1g9mG (G:)
evvlvnvtenfnmwkndmveqmhediislwdqslkpcvkltplcvgagscntsvitqacp
kvsfepipihycapagfailkcnnktfngtgpctnvstvqcthgirpvvstqlllngsla
eeevvirsvnftdnaktiivqlntsveinctgaghcnisrakwnntlkqiasklreqfgn
nktiifkqssggdpeivthsfncggeffycnstqlfnstwfngsdtitlpcrikqiinmw
qkvgkamyappisgqircssnitgllltrdggnsnneseifrpgggdmrdnwrselykyk
vvkie
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1g9mH (H:)
qvqllesgaevkkpgssvkvsckasgdtfirysftwvrqapgqglewmgriitildvahy
aphlqgrvtitadkststvylelrnlrsddtavyfcagvyegeadegeyrnngflkhwgq
gtlvtvtsastkgpsvfplapsskstsggtaalgclvkdyfpqpvtvswnsgaltsgvht
fpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1g9mL (L:)
eleltqspatlsvspgeratlscrasesvssdlawyqqkpgqaprlliygastratgvpa
rfsgsgsgaeftltisslqsedfavyycqqynnwpprytfgqgtrleikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqkskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrg