PDB entry 1g16
View 1g16 on RCSB PDB site
Description: crystal structure of sec4-GDP
Class: signaling protein,endocytosis/exocytosis
Keywords: G protein Rab, SIGNALING PROTEIN, ENDOCYTOSIS/EXOCYTOSIS COMPLEX, SIGNALING PROTEIN,ENDOCYTOSIS/EXOCYTOSIS COMPLEX
Deposited on
2000-10-10, released
2000-12-11
The last revision prior to the SCOPe 2.03 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.276
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ras-related protein SEC4
Species: Saccharomyces cerevisiae [TaxId:4932]
Database cross-references and differences (RAF-indexed):
- Uniprot P07560
- modified residue (3)
- conflict (55)
- modified residue (76)
- conflict (84)
- modified residue (119)
Domains in SCOPe 2.03: d1g16a_ - Chain 'B':
Compound: Ras-related protein SEC4
Species: Saccharomyces cerevisiae [TaxId:4932]
Database cross-references and differences (RAF-indexed):
- Uniprot P07560
- modified residue (3)
- conflict (55)
- modified residue (76)
- conflict (84)
- modified residue (119)
Domains in SCOPe 2.03: d1g16b_ - Chain 'C':
Compound: Ras-related protein SEC4
Species: Saccharomyces cerevisiae [TaxId:4932]
Database cross-references and differences (RAF-indexed):
- Uniprot P07560
- modified residue (3)
- conflict (55)
- modified residue (76)
- conflict (84)
- modified residue (119)
Domains in SCOPe 2.03: d1g16c_ - Chain 'D':
Compound: Ras-related protein SEC4
Species: Saccharomyces cerevisiae [TaxId:4932]
Database cross-references and differences (RAF-indexed):
- Uniprot P07560
- modified residue (3)
- conflict (55)
- modified residue (76)
- conflict (84)
- modified residue (119)
Domains in SCOPe 2.03: d1g16d_ - Heterogens: CO, GDP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1g16A (A:)
dsimkilligdsgvgkscllvrfvedkfnpsfittigidfkiktvdingkkvklqiwdta
gqerfrtittayyrgamgiilvyditdertftnikqwfktvnehandeaqlllvgnksdm
etrvvtadqgealakelgipfiessaknddnvneifftlakliqekidsn
Sequence, based on observed residues (ATOM records): (download)
>1g16A (A:)
simkilligdsgvgkscllvrfvedkfnpidfkiktvdingkkvklqiwdtagqerfrti
ttayyrgamgiilvyditdertftnikqwfktvnehandeaqlllvgnksdmetrvvtad
qgealakelgipfiessaknddnvneifftlakliqeki
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1g16B (B:)
dsimkilligdsgvgkscllvrfvedkfnpsfittigidfkiktvdingkkvklqiwdta
gqerfrtittayyrgamgiilvyditdertftnikqwfktvnehandeaqlllvgnksdm
etrvvtadqgealakelgipfiessaknddnvneifftlakliqekidsn
Sequence, based on observed residues (ATOM records): (download)
>1g16B (B:)
simkilligdsgvgkscllvrfvedkfnpidfkiktvdingkkvklqiwdtagqerfrti
ttayyrgamgiilvyditdertftnikqwfktvnehandeaqlllvgnksdmetrvvtad
qgealakelgipfiessaknddnvneifftlakliqekids
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1g16C (C:)
dsimkilligdsgvgkscllvrfvedkfnpsfittigidfkiktvdingkkvklqiwdta
gqerfrtittayyrgamgiilvyditdertftnikqwfktvnehandeaqlllvgnksdm
etrvvtadqgealakelgipfiessaknddnvneifftlakliqekidsn
Sequence, based on observed residues (ATOM records): (download)
>1g16C (C:)
simkilligdsgvgkscllvrfvedkfnpsfittigidfkiktvdingkkvklqiwdtag
qerfrtittayyrgamgiilvyditdertftnikqwfktvnehandeaqlllvgnksdme
trvvtadqgealakelgipfiessaknddnvneifftlakliqekid
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1g16D (D:)
dsimkilligdsgvgkscllvrfvedkfnpsfittigidfkiktvdingkkvklqiwdta
gqerfrtittayyrgamgiilvyditdertftnikqwfktvnehandeaqlllvgnksdm
etrvvtadqgealakelgipfiessaknddnvneifftlakliqekidsn
Sequence, based on observed residues (ATOM records): (download)
>1g16D (D:)
imkilligdsgvgkscllvrfvedkfnpidfkiktvdingkkvklqiwdtagqerfrtit
tayyrgamgiilvyditdertftnikqwfktvnehandeaqlllvgnksdmetrvvtadq
gealakelgipfiessaknddnvneifftlakliqekids