PDB entry 1ffn

View 1ffn on RCSB PDB site
Description: crystal structure of murine class I h-2db complexed with peptide gp33(c9m)
Class: immune system/signaling protein
Keywords: major histocompatibility complex, peptide binding, T cell receptor, crystallography, IMMUNE SYSTEM/SIGNALING PROTEIN COMPLEX
Deposited on 2000-07-25, released 2002-12-11
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.24
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: H-2 class I histocompatibility antigen, D-B alpha chain
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01899 (0-272)
  Domains in SCOPe 2.02: d1ffna1, d1ffna2
• Chain 'B':
  Compound: beta-2 microglobulin, beta chain
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01887 (1-99)
  Domains in SCOPe 2.02: d1ffnb_
• Chain 'C':
  Compound: synthetic peptide with sequence lys-ala-val-tyr-asn-phe-ala-thr-met
  Species: synthetic, synthetic
  Database cross-references and differences (RAF-indexed):
  • PDB 1FFN (0-8)
• Chain 'D':
  Compound: H-2 class I histocompatibility antigen, D-B alpha chain
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01899 (0-272)
  Domains in SCOPe 2.02: d1ffnd1, d1ffnd2
• Chain 'E':
  Compound: beta-2 microglobulin, beta chain
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01887 (1-99)
  Domains in SCOPe 2.02: d1ffne_
• Chain 'F':
  Compound: synthetic peptide with sequence lys-ala-val-tyr-asn-phe-ala-thr-met
  Species: synthetic, synthetic
  Database cross-references and differences (RAF-indexed):
  • PDB 1FFN (0-8)
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ffnA (A:)
  phsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeywe
  retqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayegr
  dyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatllr
  tdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtf
  qkwasvvvplgkeqnytcrvyheglpepltlrw
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ffnB (B:)
  miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
  wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
  

  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ffnD (D:)
  phsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeywe
  retqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayegr
  dyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatllr
  tdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtf
  qkwasvvvplgkeqnytcrvyheglpepltlrw
  

  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ffnE (E:)
  miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
  wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
  

  
  
• Chain 'F':
  No sequence available.