PDB entry 1e3h

View 1e3h on RCSB PDB site
Description: semet derivative of streptomyces antibioticus pnpase/gpsi enzyme
Class: polyribonucleotide transferase
Keywords: polyribonucleotide transferase, ATP:GTP diphosphotransferase, RNA processing, RNA degradation
Deposited on 2000-06-15, released 2000-11-05
The last revision prior to the SCOP 1.75 freeze date was dated 2000-11-05, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.201
AEROSPACI score: -1.6 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: guanosine pentaphosphate synthetase
    Species: Streptomyces antibioticus
    Gene: GPSI
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q53597
      • modified residue (62)
      • conflict (68)
      • modified residue (90)
      • modified residue (141)
      • modified residue (200)
      • modified residue (215-216)
      • conflict (223)
      • conflict (227)
      • conflict (230-231)
      • conflict (257)
      • conflict (275)
      • sequencing ambiguity (279)
      • conflict (288-289)
      • conflict (292)
      • conflict (296-297)
      • conflict (306)
      • conflict (316)
      • sequencing ambiguity (351)
      • modified residue (398)
      • modified residue (401)
      • modified residue (417)
      • modified residue (480)
      • modified residue (488)
      • modified residue (506)
      • modified residue (535)
      • modified residue (581-582)
      • conflict (591)
      • conflict (629)
      • conflict (644)
      • conflict (646-647)
    Domains in SCOP 1.75: d1e3ha1, d1e3ha2, d1e3ha3, d1e3ha4, d1e3ha5, d1e3ha6
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1e3hA (A:)
    asmtggqqmgrgsgsefmenethyaeavidngafgtrtirfetgrlarqaagsavayldd
    dtmvlsattasknpkdqldffpltvdveermyaagkipgsffrregrpsedailtcrlid
    rplrpsfkkglrneiqvvatimalnpdhlydvvainaasastqlaglpfsgpiggvrval
    irgqwvafpthteledavfdmvvagrvledgdvaimmveaeatektiqlvkdgaeaptee
    vvaagldaakpfikvlckaqadlaakaakptgefpvfldyqddvlealsaavrpelsaal
    tiagkqdreaeldrvkalaaekllpefegrekeisaayraltkslvrerviaekkridgr
    gvtdirtlaaeveaiprvhgsalfergetqilgvttlnmlrmeqqldtlspvtrkrymhn
    ynfppysvgetgrvgspkrreighgalaeraivpvlptreefpyairqvsealgsngsts
    mgsvcastmsllnagvplkapvagiamglisqeingethyvaltdilgaedafgdmdfkv
    agtkefvtalqldtkldgipasvlaaalkqardarlhildvmmeaidtpdemspnaprii
    tvkipvdkigevigpkrqminqiqedtgaeitieddgtiyigaadgpaaeaaratingia
    nptspevgerilgsvvktttfgafvsllpgkdgllhisqirklaggkrvenvedvlgvgq
    kvqveiaeidsrgklslipviegeeaasdekkddaeq
    

    Sequence, based on observed residues (ATOM records): (download)
    >1e3hA (A:)
    nethyaeavidngafgtrtirfetgrlarqaagsavayldddtmvlsattasknpkdqld
    ffpltvdveermyaagkipgsffrregrpsedailtcrlidrplrpsfkkglrneiqvva
    timalnpdhlydvvainaasastqlaglpfsgpiggvrvalirgqwvafpthteledavf
    dmvvagrvledgdvaimmveaeatektiqlvkdgaeapteevvaagldaakpfikvlcka
    qadlaakaakptgefpvfldyqddvlealsaavrpelsaaltiagkqdreaeldrvkala
    aekllpefegrekeisaayraltkslvrerviaekkridgrgvtdirtlaaeveaiprvh
    gsalfergetqilgvttlnmlrmeqqldtlspvtrkrymhnynfppysvgetgrvgspkr
    reighgalaeraivpvlptreefpyairqvsealgsngstsmgsvcastmsllnagvplk
    apvagiamglisqeingethyvaltdilgaedafgdmdfkvagtkefvtalqldtkldgi
    pasvlaaalkqardarlhildvmmeaidtpdemspnapriiqiqedtgaeiyigaadgpa
    a