PDB entry 1d6e

View 1d6e on RCSB PDB site
Description: crystal structure of hla-dr4 complex with peptidomimetic and seb
Class: immune system
Keywords: complex (MHC class II/superantigen), immune system
Deposited on 1999-10-13, released 2000-06-28
The last revision prior to the SCOP 1.75 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.198
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (hla class II histocompatibility antigen)
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1d6ea1, d1d6ea2
  • Chain 'B':
    Compound: protein (hla class II histocompatibility antigen)
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1d6eb1, d1d6eb2
  • Chain 'C':
    Compound: protein (enterotoxin type b)
    Species: Staphylococcus aureus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1d6ec1, d1d6ec2
  • Chain 'D':
    Compound: protein (peptidomimetic inhibitor)
    Species: synthetic, synthetic
  • Heterogens: ACE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1d6eA (A:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    d
    

    Sequence, based on observed residues (ATOM records): (download)
    >1d6eA (A:)
    ehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalani
    avdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwlr
    ngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1d6eB (B:)
    gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
    wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvn
    gfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsl
    tspltvewrars
    

    Sequence, based on observed residues (ATOM records): (download)
    >1d6eB (B:)
    trprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaeywn
    sqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypallvcsvngfypgsievrw
    frngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsltspltvewra
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1d6eC (C:)
    esqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgn
    ydnvrvefknkdladkykdkyvdvfganyyyqcyfskktndinshqtdkrktcmyggvte
    hngnqldkyrsitvrvfedgknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnns
    pyetgyikfienensfwydmmpapgdkfdqskylmmyndnkmvdskdvkievylttkkk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1d6eC (C:)
    sqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgny
    dnvrvefknkdladkykdkyvdvfganyyyqcyfskkrktcmyggvtehngnqldkyrsi
    tvrvfedgknllsfdvqtnkkkvtaqeldyltrhylvknkklyefnnspyetgyikfien
    ensfwydmmpapgdkfdqskylmmyndnkmvdskdvkievylttk
    

  • Chain 'D':
    No sequence available.