PDB entry 1d5y

View 1d5y on RCSB PDB site
Description: crystal structure of the e. coli rob transcription factor in complex with DNA
Class: transcription/DNA
Keywords: Protein-DNA complex, Rob Transcription factor, DNA, transcription/DNA COMPLEX
Deposited on 1999-10-12, released 2000-04-24
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.254
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: rob transcription factor
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1d5ya1, d1d5ya2, d1d5ya3, d1d5ya4
  • Chain 'B':
    Compound: rob transcription factor
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1d5yb1, d1d5yb2, d1d5yb3, d1d5yb4
  • Chain 'C':
    Compound: rob transcription factor
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1d5yc1, d1d5yc2, d1d5yc3, d1d5yc4
  • Chain 'D':
    Compound: rob transcription factor
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1d5yd1, d1d5yd2, d1d5yd3, d1d5yd4
  • Chain 'M':
    Compound: DNA (5'-d(*tp*gp*ap*cp*ap*gp*cp*ap*cp*tp*gp*ap*ap*tp*gp*tp*cp*ap*ap*ap*g)-3')
  • Chain 'N':
    Compound: DNA (5'-d(*ap*cp*tp*tp*tp*gp*ap*cp*ap*tp*tp*cp*ap*gp*tp*gp*cp*tp*gp*tp*c)-3')
  • Chain 'O':
    Compound: DNA (5'-d(*tp*gp*ap*cp*ap*gp*cp*ap*cp*tp*gp*ap*ap*tp*gp*tp*cp*ap*ap*ap*g)-3')
  • Chain 'P':
    Compound: DNA (5'-d(*ap*cp*tp*tp*tp*gp*ap*cp*ap*tp*tp*cp*ap*gp*tp*gp*cp*tp*gp*tp*c)-3')

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1d5yA (A:)
qagiirdlliwleghldqplsldnvaakagyskwhlqrmfkdvtghaigayirarrlsks
avalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlge
ftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlygln
etrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefilt
vygtcmpmlnltrrkgqdieryypaedakagdrpinlrcellipirrklaaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1d5yA (A:)
qagiirdlliwleghldqplsldnvaakagyskwhlqrmfkdvtghaigayirarrlsks
avalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlge
ftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlygln
etrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefilt
vygtcmpmlnltrrkgqdieryypaeddrpinlrcellipirrklaaa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1d5yB (B:)
qagiirdlliwleghldqplsldnvaakagyskwhlqrmfkdvtghaigayirarrlsks
avalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlge
ftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlygln
etrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefilt
vygtcmpmlnltrrkgqdieryypaedakagdrpinlrcellipirrklaaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1d5yB (B:)
qagiirdlliwleghldqplsldnvaakagyskwhlqrmfkdvtghaigayirarrlsks
avalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlge
ftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlygln
etrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefilt
vygtcmpmlnltrrkgqdieryypaeddrpinlrcellipirrklaaa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1d5yC (C:)
qagiirdlliwleghldqplsldnvaakagyskwhlqrmfkdvtghaigayirarrlsks
avalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlge
ftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlygln
etrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefilt
vygtcmpmlnltrrkgqdieryypaedakagdrpinlrcellipirrklaaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1d5yC (C:)
qagiirdlliwleghldqplsldnvaakagyskwhlqrmfkdvtghaigayirarrlsks
avalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlge
ftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlygln
etrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefilt
vygtcmpmlnltrrkgqdieryypaeddrpinlrcellipirrklaaa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1d5yD (D:)
qagiirdlliwleghldqplsldnvaakagyskwhlqrmfkdvtghaigayirarrlsks
avalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlge
ftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlygln
etrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefilt
vygtcmpmlnltrrkgqdieryypaedakagdrpinlrcellipirrklaaa

    Sequence, based on observed residues (ATOM records): (download) 
    >1d5yD (D:)
qagiirdlliwleghldqplsldnvaakagyskwhlqrmfkdvtghaigayirarrlsks
avalrltarpildialqyrfdsqqtftrafkkqfaqtpalyrrspewsafgirpplrlge
ftmpehkfvtledtpligvtqsyscsleqisdfrhemryqfwhdflgnaptippvlygln
etrpsqdkddeqevfyttalaqdqadgyvltghpvmlqggeyvmftyeglgtgvqefilt
vygtcmpmlnltrrkgqdieryypaeddrpinlrcellipirrklaaa

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.