PDB entry 1cd1

View 1cd1 on RCSB PDB site
Description: cd1(mouse) antigen presenting molecule
Class: cd1
Keywords: cd1, immunology, MHC, tcr, glycoprotein, signal, immunoglobulin fold, T-cell
Deposited on 1997-04-02, released 1997-10-15
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.67 Å
R-factor: 0.192
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cd1
    Species: Mus musculus [TaxId:10090]
    Gene: CD1.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11609
      • conflict (197)
    Domains in SCOPe 2.03: d1cd1a1, d1cd1a2
  • Chain 'B':
    Compound: cd1
    Species: Mus musculus [TaxId:10090]
    Gene: CD1.1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1cd1b_
  • Chain 'C':
    Compound: cd1
    Species: Mus musculus [TaxId:10090]
    Gene: CD1.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11609
      • conflict (197)
    Domains in SCOPe 2.03: d1cd1c1, d1cd1c2
  • Chain 'D':
    Compound: cd1
    Species: Mus musculus [TaxId:10090]
    Gene: CD1.1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1cd1d_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1cd1A (A:)
    qqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqw
    eklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgk
    yvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdl
    ekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnade
    twylqatldveageeaglacrvkhsslggqdiilywdarqapvglivfivlimlvvvgav
    vyyiwrrrsayqdir
    

    Sequence, based on observed residues (ATOM records): (download)
    >1cd1A (A:)
    nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
    qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvv
    rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekq
    ekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
    lqatldveageeaglacrvkhsslggqdiilyw
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1cd1B (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhdsmaepktvywdrdm
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1cd1C (C:)
    qqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqw
    eklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgk
    yvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdl
    ekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnade
    twylqatldveageeaglacrvkhsslggqdiilywdarqapvglivfivlimlvvvgav
    vyyiwrrrsayqdir
    

    Sequence, based on observed residues (ATOM records): (download)
    >1cd1C (C:)
    nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
    qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvv
    rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekq
    ekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
    lqatldveageeaglacrvkhsslggqdiilyw
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1cd1D (D:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhdsmaepktvywdrdm