PDB entry 1cd1

View 1cd1 on RCSB PDB site
Description: cd1(mouse) antigen presenting molecule
Class: cd1
Keywords: cd1, immunology, MHC, tcr, glycoprotein, signal, immunoglobulin fold, T-cell
Deposited on 1997-04-02, released 1997-10-15
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.67 Å
R-factor: 0.192
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cd1
    Species: Mus musculus [TaxId:10090]
    Gene: CD1.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11609
      • conflict (197)
    Domains in SCOPe 2.01: d1cd1a1, d1cd1a2
  • Chain 'B':
    Compound: cd1
    Species: Mus musculus [TaxId:10090]
    Gene: CD1.1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1cd1b_
  • Chain 'C':
    Compound: cd1
    Species: Mus musculus [TaxId:10090]
    Gene: CD1.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11609
      • conflict (197)
    Domains in SCOPe 2.01: d1cd1c1, d1cd1c2
  • Chain 'D':
    Compound: cd1
    Species: Mus musculus [TaxId:10090]
    Gene: CD1.1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1cd1d_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1cd1A (A:)
qqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqw
eklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgk
yvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdl
ekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnade
twylqatldveageeaglacrvkhsslggqdiilywdarqapvglivfivlimlvvvgav
vyyiwrrrsayqdir

    Sequence, based on observed residues (ATOM records): (download) 
    >1cd1A (A:)
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvv
rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekq
ekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
lqatldveageeaglacrvkhsslggqdiilyw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1cd1B (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1cd1C (C:)
qqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqw
eklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgk
yvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdl
ekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnade
twylqatldveageeaglacrvkhsslggqdiilywdarqapvglivfivlimlvvvgav
vyyiwrrrsayqdir

    Sequence, based on observed residues (ATOM records): (download) 
    >1cd1C (C:)
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvv
rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekq
ekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
lqatldveageeaglacrvkhsslggqdiilyw

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1cd1D (D:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm