PDB entry 1bpz

View 1bpz on RCSB PDB site
Description: human DNA polymerase beta complexed with nicked DNA
Class: transferase/DNA
Keywords: nucleotidyltransferase, DNA repair, base excision repair pathway, transferase/DNA complex
Deposited on 1997-04-14, released 1997-06-16
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.243
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (DNA polymerase beta)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1bpza1, d1bpza3, d1bpza4
  • Chain 'D':
    Compound: DNA (5'-d(*gp*tp*cp*gp*g)-3')
  • Chain 'P':
    Compound: DNA (5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*tp*g)-3')
  • Chain 'T':
    Compound: DNA (5'-d(*cp*cp*gp*ap*cp*cp*ap*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
  • Heterogens: NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1bpzA (A:)
mskrkapqetlnggitdmltelanfeknvsqaihkynayrkaasviakyphkiksgaeak
klpgvgtkiaekideflatgklrklekirqddtsssinfltrvsgigpsaarkfvdegik
tledlrknedklnhhqriglkyfgdfekripreemlqmqdivlnevkkvdseyiatvcgs
frrgaessgdmdvllthpsftsestkqpkllhqvveqlqkvhfitdtlskgetkfmgvcq
lpskndekeyphrridirlipkdqyycgvlyftgsdifnknmrahalekgftineytirp
lgvtgvageplpvdsekdifdyiqwkyrepkdrse

    Sequence, based on observed residues (ATOM records): (download) 
    >1bpzA (A:)
kapqetlnggitdmltelanfeknvsqaihkynayrkaasviakyphkiksgaeakklpg
vgtkiaekideflatgklrklekirqddtsssinfltrvsgigpsaarkfvdegiktled
lrknedklnhhqriglkyfgdfekripreemlqmqdivlnevkkvdseyiatvcgsfrrg
aessgdmdvllthpsftsestkqpkllhqvveqlqkvhfitdtlskgetkfmgvcqlpsk
ndekeyphrridirlipkdqyycgvlyftgsdifnknmrahalekgftineytirplgvt
gvageplpvdsekdifdyiqwkyrepkdrse

  • Chain 'D':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.