PDB entry 1bog
View 1bog on RCSB PDB site
Description: anti-p24 (hiv-1) fab fragment cb41 complexed with an epitope-homologous peptide
Class: complex (antibody/peptide)
Keywords: polyspecificity, cross reactivity, fab-fragment, peptide, hiv-1, complex (antibody/peptide)
Deposited on
1998-08-04, released
1999-03-23
The last revision prior to the SCOPe 2.03 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.246
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: antibody (cb 4-1)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- GB AAA38767 (0-213)
- conflict (12)
- conflict (21)
- conflict (31)
- conflict (36)
- conflict (47)
- conflict (54-55)
- conflict (69-70)
- conflict (92)
- conflict (104)
- conflict (128)
- conflict (142)
- conflict (160)
- conflict (164)
Domains in SCOPe 2.03: d1boga1, d1boga2 - Chain 'B':
Compound: antibody (cb 4-1)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01864 (0-211)
- conflict (1)
- conflict (8)
- conflict (19)
- conflict (24)
- conflict (27)
- conflict (32)
- conflict (39)
- conflict (41-42)
- conflict (49)
- conflict (51)
- conflict (55-56)
- conflict (58)
- conflict (61)
- conflict (71)
- conflict (73)
- conflict (76)
- conflict (79)
- conflict (81)
- conflict (94)
- conflict (96)
- conflict (98)
- conflict (106)
- conflict (111)
- conflict (123)
- conflict (128)
- conflict (167)
- conflict (171)
- conflict (184)
- conflict (190)
Domains in SCOPe 2.03: d1bogb1, d1bogb2 - Chain 'C':
Compound: peptide
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1bogA (A:)
dikmtqspssmytslgervtitckasqdinsfltwflqkpgkspktliyranrlmigvps
rfsgsgsgqtysltissleyedmgiyyclqyddfpltfgagtkldlkradaaptvsifpp
sseqltsgtasvvcflnnfypkeinvkwkidgserqngvldswteqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1bogB (B:)
qdqlqqsgaelvrpgasvklsckalgyiftdyeihwvkqtpvhglewiggihpgssgtay
nqkfkgkatltadkssttafmelssltsedsavyyctrkdywgqgtlvtvsaakttapsv
yplvpvcggttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpallqsglytlsssv
tvtsntwpsqtitcnvahpasstkvdkkieprv
- Chain 'C':
No sequence available.