PDB entry 1bog

View 1bog on RCSB PDB site
Description: anti-p24 (hiv-1) fab fragment cb41 complexed with an epitope-homologous peptide
Class: complex (antibody/peptide)
Keywords: polyspecificity, cross reactivity, fab-fragment, peptide, hiv-1, complex (antibody/peptide)
Deposited on 1998-08-04, released 1999-03-23
The last revision prior to the SCOP 1.75 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.246
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: antibody (cb 4-1)
  Species: Mus musculus
  Database cross-references and differences (RAF-indexed):
  • GB AAA38767 (0-213)
    • conflict (12)
    • conflict (21)
    • conflict (31)
    • conflict (36)
    • conflict (47)
    • conflict (54-55)
    • conflict (69-70)
    • conflict (92)
    • conflict (104)
    • conflict (128)
    • conflict (142)
    • conflict (160)
    • conflict (164)
  Domains in SCOP 1.75: d1boga1, d1boga2
• Chain 'B':
  Compound: antibody (cb 4-1)
  Species: Mus musculus
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01864 (0-211)
    • conflict (1)
    • conflict (8)
    • conflict (19)
    • conflict (24)
    • conflict (27)
    • conflict (32)
    • conflict (39)
    • conflict (41-42)
    • conflict (49)
    • conflict (51)
    • conflict (55-56)
    • conflict (58)
    • conflict (61)
    • conflict (71)
    • conflict (73)
    • conflict (76)
    • conflict (79)
    • conflict (81)
    • conflict (94)
    • conflict (96)
    • conflict (98)
    • conflict (106)
    • conflict (111)
    • conflict (123)
    • conflict (128)
    • conflict (167)
    • conflict (171)
    • conflict (184)
    • conflict (190)
  Domains in SCOP 1.75: d1bogb1, d1bogb2
• Chain 'C':
  Compound: peptide
  
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1bogA (A:)
  dikmtqspssmytslgervtitckasqdinsfltwflqkpgkspktliyranrlmigvps
  rfsgsgsgqtysltissleyedmgiyyclqyddfpltfgagtkldlkradaaptvsifpp
  sseqltsgtasvvcflnnfypkeinvkwkidgserqngvldswteqdskdstysmsstlt
  ltkdeyerhnsytceathktstspivksfnrnec
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1bogB (B:)
  qdqlqqsgaelvrpgasvklsckalgyiftdyeihwvkqtpvhglewiggihpgssgtay
  nqkfkgkatltadkssttafmelssltsedsavyyctrkdywgqgtlvtvsaakttapsv
  yplvpvcggttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpallqsglytlsssv
  tvtsntwpsqtitcnvahpasstkvdkkieprv
  

  
  
• Chain 'C':
  No sequence available.