PDB entry 1bdx
View 1bdx on RCSB PDB site
Description: e. coli DNA helicase ruva with bound DNA holliday junction, alpha carbons and phosphate atoms only
Class: transferase/DNA
Keywords: DNA-binding, branch migration, holliday junction, ruv, complex DNA-binding protein/DNA, transferase/DNA complex
Deposited on
1998-05-11, released
1999-05-11
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 6 Å
R-factor: N/A
AEROSPACI score: -0.03
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: holliday junction DNA helicase ruva
Species: Escherichia coli [TaxId:469008]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1bdxa1, d1bdxa2, d1bdxa3 - Chain 'B':
Compound: holliday junction DNA helicase ruva
Species: Escherichia coli [TaxId:469008]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1bdxb1, d1bdxb2, d1bdxb3 - Chain 'C':
Compound: holliday junction DNA helicase ruva
Species: Escherichia coli [TaxId:469008]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1bdxc1, d1bdxc2, d1bdxc3 - Chain 'D':
Compound: holliday junction DNA helicase ruva
Species: Escherichia coli [TaxId:469008]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1bdxd1, d1bdxd2, d1bdxd3 - Chain 'J':
Compound: DNA (5'-d(p*gp*cp*ap*tp*gp*cp*ap*tp*ap*tp*gp*cp*ap*tp*gp*c)-3')
- Chain 'K':
Compound: DNA (5'-d(p*gp*cp*ap*tp*gp*cp*ap*tp*ap*tp*gp*cp*ap*tp*gp*c)-3')
- Chain 'L':
Compound: DNA (5'-d(p*gp*cp*ap*tp*gp*cp*ap*tp*ap*tp*gp*cp*ap*tp*gp*c)-3')
- Chain 'M':
Compound: DNA (5'-d(p*gp*cp*ap*tp*gp*cp*ap*tp*ap*tp*gp*cp*ap*tp*gp*c)-3')
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1bdxA (A:)
migrlrgiiiekqpplvlievggvgyevhmpmtcfyelpeagqeaivfthfvvredaqll
ygfnnkqertlfkeliktngvgpklalailsgmsaqqfvnavereevgalvklpgigkkt
aerlivemkdrfkglhgdlftpaadlvltspaspatddaeqeavaalvalgykpqeasrm
vskiarpdassetlirealraal
Sequence, based on observed residues (ATOM records): (download)
>1bdxA (A:)
migrlrgiiiekqpplvlievggvgyevhmpmtcfyelpeagqeaivfthfvvredaqll
ygfnnkqertlfkeliktngvgpklalailsgmsaqqfvnavereevgalvklpgigkkt
aerlivemkdrfkglhgdlftptddaeqeavaalvalgykpqeasrmvskiarpdasset
lirealraal
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1bdxB (B:)
migrlrgiiiekqpplvlievggvgyevhmpmtcfyelpeagqeaivfthfvvredaqll
ygfnnkqertlfkeliktngvgpklalailsgmsaqqfvnavereevgalvklpgigkkt
aerlivemkdrfkglhgdlftpaadlvltspaspatddaeqeavaalvalgykpqeasrm
vskiarpdassetlirealraal
Sequence, based on observed residues (ATOM records): (download)
>1bdxB (B:)
migrlrgiiiekqpplvlievggvgyevhmpmtcfyelpeagqeaivfthfvvredaqll
ygfnnkqertlfkeliktngvgpklalailsgmsaqqfvnavereevgalvklpgigkkt
aerlivemkdrfkglhgdlftptddaeqeavaalvalgykpqeasrmvskiarpdasset
lirealraal
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1bdxC (C:)
migrlrgiiiekqpplvlievggvgyevhmpmtcfyelpeagqeaivfthfvvredaqll
ygfnnkqertlfkeliktngvgpklalailsgmsaqqfvnavereevgalvklpgigkkt
aerlivemkdrfkglhgdlftpaadlvltspaspatddaeqeavaalvalgykpqeasrm
vskiarpdassetlirealraal
Sequence, based on observed residues (ATOM records): (download)
>1bdxC (C:)
migrlrgiiiekqpplvlievggvgyevhmpmtcfyelpeagqeaivfthfvvredaqll
ygfnnkqertlfkeliktngvgpklalailsgmsaqqfvnavereevgalvklpgigkkt
aerlivemkdrfkglhgdlftptddaeqeavaalvalgykpqeasrmvskiarpdasset
lirealraal
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1bdxD (D:)
migrlrgiiiekqpplvlievggvgyevhmpmtcfyelpeagqeaivfthfvvredaqll
ygfnnkqertlfkeliktngvgpklalailsgmsaqqfvnavereevgalvklpgigkkt
aerlivemkdrfkglhgdlftpaadlvltspaspatddaeqeavaalvalgykpqeasrm
vskiarpdassetlirealraal
Sequence, based on observed residues (ATOM records): (download)
>1bdxD (D:)
migrlrgiiiekqpplvlievggvgyevhmpmtcfyelpeagqeaivfthfvvredaqll
ygfnnkqertlfkeliktngvgpklalailsgmsaqqfvnavereevgalvklpgigkkt
aerlivemkdrfkglhgdlftptddaeqeavaalvalgykpqeasrmvskiarpdasset
lirealraal
- Chain 'J':
No sequence available.
- Chain 'K':
No sequence available.
- Chain 'L':
No sequence available.
- Chain 'M':
No sequence available.