PDB entry 1ar1

View 1ar1 on RCSB PDB site
Description: structure at 2.7 angstrom resolution of the paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody fv fragment
Class: complex (oxidoreductase/antibody)
Keywords: complex (oxidoreductase/antibody), electron transport, transmembrane, cytochrome oxidase, antibody complex
Deposited on 1997-08-08, released 1998-02-11
The last revision prior to the SCOP 1.75 freeze date was dated 1998-02-11, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.207
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cytochrome c oxidase
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1ar1a_
  • Chain 'B':
    Compound: cytochrome c oxidase
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1ar1b1, d1ar1b2
  • Chain 'C':
    Compound: antibody fv fragment
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d1ar1c_
  • Chain 'D':
    Compound: antibody fv fragment
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d1ar1d_
  • Heterogens: CU, MG, CA, HEA, LDA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ar1A (A:)
madaavhghgdhhdtrgfftrwfmstnhkdigilylftagivglisvcftvymrmelqhp
gvqymclegarliadasaectpnghlwnvmityhgvlmmffvvipalfggfgnyfmplhi
gapdmafprlnnlsywmyvcgvalgvasllapggndqmgsgvgwvlypplstteagysmd
laifavhvsgassilgainiittflnmrapgmtlfkvplfawsvfitawlillslpvlag
aitmllmdrnfgtqffdpagggdpvlyqhilwffghpevyiiilpgfgiishvistfakk
pifgylpmvlamaaigilgfvvwahhmytagmsltqqayfmlatmtiavptgikvfswia
tmwggsiefktpmlwafgflflftvggvtgvvlsqapldrvyhdtyyvvahfhyvmslga
vfgifagvyywigkmsgrqypewagqlhfwmmfigsnliffpqhflgrqgmprryidypv
efaywnnissigayisfasflffigivfytlfagkrvnvpnywnehadtlewtlpspppe
htfetlpkredwdrahah

    Sequence, based on observed residues (ATOM records): (download) 
    >1ar1A (A:)
gfftrwfmstnhkdigilylftagivglisvcftvymrmelqhpgvqymclegarliada
saectpnghlwnvmityhgvlmmffvvipalfggfgnyfmplhigapdmafprlnnlsyw
myvcgvalgvasllapggndqmgsgvgwvlypplstteagysmdlaifavhvsgassilg
ainiittflnmrapgmtlfkvplfawsvfitawlillslpvlagaitmllmdrnfgtqff
dpagggdpvlyqhilwffghpevyiiilpgfgiishvistfakkpifgylpmvlamaaig
ilgfvvwahhmytagmsltqqayfmlatmtiavptgikvfswiatmwggsiefktpmlwa
fgflflftvggvtgvvlsqapldrvyhdtyyvvahfhyvmslgavfgifagvyywigkms
grqypewagqlhfwmmfigsnliffpqhflgrqgmprryidypvefaywnnissigayis
fasflffigivfytlfagkrvnvpnywnehadtlewtlpspppehtfet

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ar1B (B:)
mmaiatkrrgvaavmslgvatmtavpalaqdvlgdlpvigkpvnggmnfqpassplahdq
qwldhfvlyiitavtifvcllllicivrfnrranpvparfthntpieviwtlvpvlilva
igafslpilfrsqempndpdlvikaighqwywsyeypndgvafdalmlekealadagyse
deyllatdnpvvvpvgkkvlvqvtatdvihawtipafavkqdavpgriaqlwfsvdqegv
yfgqcselcginhaympivvkavsqekyeawlagakeefaadasdylpaspvklasae

    Sequence, based on observed residues (ATOM records): (download) 
    >1ar1B (B:)
qdvlgdlpvigkpvnggmnfqpassplahdqqwldhfvlyiitavtifvcllllicivrf
nrranpvparfthntpieviwtlvpvlilvaigafslpilfrsqempndpdlvikaighq
wywsyeypndgvafdalmlekealadagysedeyllatdnpvvvpvgkkvlvqvtatdvi
hawtipafavkqdavpgriaqlwfsvdqegvyfgqcselcginhaympivvkavsqekye
awlagakeefaa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ar1C (C:)
evklqesggdlvqpggslklscaasgftfssytmswvrqtpekrlewvasinngggrtyy
pdtvkgrftisrdnakntlylqmsslksedtamyycvrheyyyamdywgqgttvtvssaw
rhpqfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1ar1C (C:)
evklqesggdlvqpggslklscaasgftfssytmswvrqtpekrlewvasinngggrtyy
pdtvkgrftisrdnakntlylqmsslksedtamyycvrheyyyamdywgqgttvtvss

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1ar1D (D:)
dieltqtpvslsasvgetvtitcraseniysylawyqqkqgkspqflvynaktlgegvps
rfsgsgsgtqfslkinsllpedfgsyycqhhygtppltfgggtkleikreqkliseedlm

    Sequence, based on observed residues (ATOM records): (download) 
    >1ar1D (D:)
dieltqtpvslsasvgetvtitcraseniysylawyqqkqgkspqflvynaktlgegvps
rfsgsgsgtqfslkinsllpedfgsyycqhhygtppltfgggtkleik