PDB entry 1agc

View 1agc on RCSB PDB site
Description: antagonist hiv-1 gag peptides induce structural changes in hla b8-hiv-1 gag peptide (ggkkkyql-7q mutation)
Class: histocompatibility complex
Keywords: hla b8, hiv, MHC class I, histocompatibility complex
Deposited on 1997-03-24, released 1997-06-16
The last revision prior to the SCOP 1.73 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.184
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: b*0801
    Species: HOMO SAPIENS
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1agca1, d1agca2
  • Chain 'B':
    Compound: beta-2 microglobulin
    Species: HOMO SAPIENS
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1agcb_
  • Chain 'C':
    Compound: hiv-1 gag peptide (ggkkkyql - 7q mutation)
    Species: Human immunodeficiency virus 1
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1agcA (A:)
gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaaspreeprapwieqegpeyw
drntqifktntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydg
kdyialnedlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtle
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwep

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1agcB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    No sequence available.