PDB entry 1afv

View 1afv on RCSB PDB site
Description: hiv-1 capsid protein (p24) complex with fab25.3
Class: Viral protein/Immune system
Keywords: complex (viral capsid/immunoglobulin), hiv, capsid protein, p24
Deposited on 1997-03-14, released 1997-08-20
The last revision prior to the SCOP 1.73 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.7 Å
R-factor: 0.217
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: human immunodeficiency virus type 1 capsid protein
    Species: Human immunodeficiency virus 1
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1afva_
  • Chain 'B':
    Compound: human immunodeficiency virus type 1 capsid protein
    Species: Human immunodeficiency virus 1
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1afvb_
  • Chain 'H':
    Compound: antibody fab25.3 fragment (heavy chain)
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99LC4 (0-218)
      • conflict (0)
      • conflict (2)
      • conflict (4-6)
      • conflict (8-9)
      • conflict (15)
      • conflict (19)
      • conflict (30-31)
      • conflict (33-34)
      • conflict (36)
      • conflict (42)
      • conflict (49)
      • conflict (51)
      • conflict (53-54)
      • conflict (56)
      • conflict (71)
      • conflict (80-81)
      • conflict (94)
      • conflict (98-99)
      • conflict (103)
      • conflict (108)
      • conflict (115)
    Domains in SCOP 1.73: d1afvh1, d1afvh2
  • Chain 'K':
    Compound: antibody fab25.3 fragment (heavy chain)
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99LC4 (0-218)
      • conflict (0)
      • conflict (2)
      • conflict (4-6)
      • conflict (8-9)
      • conflict (15)
      • conflict (19)
      • conflict (30-31)
      • conflict (33-34)
      • conflict (36)
      • conflict (42)
      • conflict (49)
      • conflict (51)
      • conflict (53-54)
      • conflict (56)
      • conflict (71)
      • conflict (80-81)
      • conflict (94)
      • conflict (98-99)
      • conflict (103)
      • conflict (108)
      • conflict (115)
    Domains in SCOP 1.73: d1afvk1, d1afvk2
  • Chain 'L':
    Compound: antibody fab25.3 fragment (light chain)
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • GB AAA92993 (2-216)
      • conflict (3)
      • conflict (17-18)
      • conflict (29-30)
      • conflict (33)
      • conflict (35)
      • conflict (37)
      • conflict (39)
      • conflict (53)
      • conflict (57-58)
      • conflict (81)
      • conflict (84)
      • conflict (86)
      • conflict (88)
      • conflict (95-96)
      • conflict (99)
      • conflict (103)
      • conflict (107)
      • conflict (109)
    Domains in SCOP 1.73: d1afvl1, d1afvl2
  • Chain 'M':
    Compound: antibody fab25.3 fragment (light chain)
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • GB AAA92993 (2-216)
      • conflict (3)
      • conflict (17-18)
      • conflict (29-30)
      • conflict (33)
      • conflict (35)
      • conflict (37)
      • conflict (39)
      • conflict (53)
      • conflict (57-58)
      • conflict (81)
      • conflict (84)
      • conflict (86)
      • conflict (88)
      • conflict (95-96)
      • conflict (99)
      • conflict (103)
      • conflict (107)
      • conflict (109)
    Domains in SCOP 1.73: d1afvm1, d1afvm2
  • Heterogens: PB

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1afvA (A:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmysptsil

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1afvB (B:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmysptsil

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1afvH (H:)
qvqlqqpgsvlvrpgasvklsckasgytftsswihwakqrpgqglewigeihpnsgntny
nekfkgkatltvdtssstayvdlssltsedsavyycarwrygspyyfdywgqgttltvss
akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpk

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1afvK (K:)
qvqlqqpgsvlvrpgasvklsckasgytftsswihwakqrpgqglewigeihpnsgntny
nekfkgkatltvdtssstayvdlssltsedsavyycarwrygspyyfdywgqgttltvss
akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpk

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1afvL (L:)
divltqspaslavslgqratiscrasesvdnygisfmnwfqqkpgqppklliyaasnlgs
gvparfsgsgsgtdfslnihpmeeedtamyfcqqskevpltfgagtkvelkradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1afvM (M:)
divltqspaslavslgqratiscrasesvdnygisfmnwfqqkpgqppklliyaasnlgs
gvparfsgsgsgtdfslnihpmeeedtamyfcqqskevpltfgagtkvelkradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrne