SPACI score report for 2z9t in ASTRAL 2.01:

PDB Entry: 2z9t
SPACI score: 0.52
AEROSPACI score: 0.52

Experiment type: XRAY
Resolution: 1.8
R-factor: 0.176
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 1
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -0.814
WCK2 WHAT_CHECK Ramachandran: -0.061
WCK3 WHAT_CHECK Chi angles: -1.738
WCK4 WHAT_CHECK Backbone: 3.577

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).