SPACI score report for 2d9q in ASTRAL 1.75:

PDB Entry: 2d9q
SPACI score: 0.14
AEROSPACI score: 0.14

Experiment type: XRAY
Resolution: 2.8
R-factor: 0.253
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 3
PCK3 PROCHECK H-bonds: 3
WCK1 WHAT_CHECK Packing: -2.605
WCK2 WHAT_CHECK Ramachandran: -5.393
WCK3 WHAT_CHECK Chi angles: -5.933
WCK4 WHAT_CHECK Backbone: -1.527

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).