SPACI score report for 2ys6 in ASTRAL 2.06:

PDB Entry: 2ys6
SPACI score: 0.37
AEROSPACI score: 0.37

Experiment type: XRAY
Resolution: 2.21
R-factor: 0.204
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 2
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -0.401
WCK2 WHAT_CHECK Ramachandran: -1.901
WCK3 WHAT_CHECK Chi angles: -2.041
WCK4 WHAT_CHECK Backbone: -0.624

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).