SPACI score report for 3d5d in ASTRAL 2.04:

PDB Entry: 3d5d
SPACI score: 0.1
AEROSPACI score: 0.1

Experiment type: XRAY
Resolution: 3.21
R-factor: 0.292
PCK1 PROCHECK Ramachandran: 2
PCK2 PROCHECK Chi-1 angle: 2
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -4.529
WCK2 WHAT_CHECK Ramachandran: -5.586
WCK3 WHAT_CHECK Chi angles: -3.616
WCK4 WHAT_CHECK Backbone: 0.095

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).