SPACI score report for 1yef in ASTRAL 1.59:

PDB Entry: 1yef
SPACI score: 0.43
AEROSPACI score: 0.43

Experiment type: XRAY
Resolution: 2
R-factor: 0.199
PCK1 PROCHECK Ramachandran: 1
PCK2 PROCHECK Chi-1 angle: 2
PCK3 PROCHECK H-bonds: 2
WCK1 WHAT_CHECK Packing: -0.722
WCK2 WHAT_CHECK Ramachandran: 0.021
WCK3 WHAT_CHECK Chi angles: -1.259
WCK4 WHAT_CHECK Backbone: 0.556

Note: Here are links to pages about PROCHECK and WHAT_CHECK.

Here is the full WHAT_CHECK report on this protein (linked from the WHAT_CHECK site).